Chr:
Chr10
Start:
22776793
End:
22777183
Strand:
+
Ref_name:
OSA-LNCN1334
Sequence
(OSA-LNCN1334.1):
UGGCCACGUCACCCAUCUCCUCUCCUGCAGUCAAUUAGUUAGUUCAUCACCAUUGCAAGAUUCAGCGAAAGAAAUACCACCACACAGGCAUUCAGAUUCUACGUCAGAUCAGAUGAUAAGCUAGAAUUACCACCCCCCACAAAUCUGAAGAUCUGCAGUCCAAUUUGCUAGUCAAACAUAACAACUGAAGAAGAACAUGAAACACAGAUUUCUGCCAAUGCAUCAUCGACCCAACUGAUAAACAUGAAGCUGAAAUUAUACAAGGAAGAAGAAAUAUAAAUUACUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.91%
ME_num:
MEP:
30.89%
HE_num:
HEP:
61.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.93
Avg Expression:
266.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.16893764634897 | 0.0204393638872439 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.52856031643689 | 0.00235606474478785 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.32863206993393 | 0.0182575299960856 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.76134586157508 | 0.000343558519775839 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -3.09159689941516 | 0.00104699320734012 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.03192189474885 | 0.00070664473998978 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.78012734067381 | 8.77989741727411e-05 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -6.64492656468705 | 4.22103686364991e-07 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.48539917218239 | 0.0239319567638597 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.54282257882973 | 0.00414956219106277 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.58790487372876 | 0.00103215503442647 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.81204632150604 | 1.84828510182734e-06 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.23038531961293 | 0.0155214749742482 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.38403858347525 | 0.0193237087615319 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.47602173243499 | 8.4445635277619e-20 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.31716398893859 | 0.0140519755872092 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.4760776913053 | 9.04861801130456e-20 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.476202012058 | 8.57326423259942e-20 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.07516622844995 | 2.07603052658321e-37 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -7.0341033289316 | 1.32408416116827e-07 |
| 21 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.98575707564193 | 3.39996126819244e-31 |