Chr:
Chr10
Start:
22673253
End:
22676193
Strand:
+
Ref_name:
OSA-LNCN1330
Sequence
(OSA-LNCN1330.1):
GAGCAGGCGGGGCUUGUGGCGCCGGCCCGGCCGCGCGACUCGUGCCCUCGUGCUCGUGGUCGUGGGAUGUGGGGCGCCGCGCCGGGCGCAGGGCGGUAGGCGGCUGCGCCACUGAGGGCUGCCGGCACCUGGCCUGGCCGGCUGACCGGCUCAGCCGCGCAGGGCAGGACCGCAGAAGCAGGAGCAGGACAGCAACAGCAAGCCGCGCAGGACAGGAGCAGCACAACAGUGACAACACAAACUGAAACAUGAAGAAGAAGGGCCAGCUGUUGAUUUAAACUCUUUUUUGGAGAAACAAGAUGGGGCUUCAUUAAAAAAAUUUCAAUUUGCAAGCUAAGGACAAGGACAUCAUCGAUUAUUUUCAAAAUAUCAAGCGUCGAAAAGUUAAUCUCUAAAUUUGAGUAACAGAGGAAGGUUGUCUUGCUUGUGAAGUGACAUUUGUGCUAGAGCUAGCAAGACUGUAACUUGUGAUUGUCAUUGUGUUGUAAAUUGUUUGGAAUUGAAUAAAAGGUAAUUCUGAAUGUUGCAAGUUCAGAGAUGCACAAAAUGCUCUGCUAUUCAGAAAUGCAAUUCUGCAAUUCCCUGAACUUUACACUUCGACAAAAGCAAAAGCUAUCCCCCUAAACAAUCUGUUAUAUUUCAGAUUGCAGCAACUGUCCAUGCUACUAGAAAUCAGCCAAAACAUCAUCUGUAAUUGGCCCCUGUAAAAUAAAAGGUUCAGAAAAACAAUUGAGAGAAUGUAUUGAUGGCCAUCUAUGGUAUAGAAAAAUGGUGUGUUAGUUUGAAAUAUUACCGUCAAUAUCUGAGAGAAGGUAUUGAUGGCCAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.46%
ME_num:
MEP:
43.5%
HE_num:
HEP:
52.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.66
Avg Expression:
16.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.60772256701136 | 3.10077571137257e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.04392056800219 | 2.9097487454234e-07 |
3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -6.89549526964481 | 5.56413433263611e-07 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.39824334073459 | 1.7895485874056e-06 |