Chr:
Chr10
Start:
22555696
End:
22562011
Strand:
+
Ref_name:
OSA-LNCN1327
Sequence
(OSA-LNCN1327.1):
CGUGGAUAUCAUGCAUUUUACACACGAGAAUCAGGAGCAAUUGAUGACAACUUUAAUUACCACGACUCAGCAAGUCGAAUUCGAUUUGCGUCCCUCAACCCAAAAACCAGACACAACGGGUCCCUCAACUAUCAAAACCGAUGUAGAUUAGGUUAAAGACCCGUUGUAUCUGGUUUUCCGGUUGAAUGACGAAAAUUGGAUUCGUUGACAAGUUAAGGAACCUCAGAUGAACUUAUUUCUGGAGGGAUUAACCGACUUCAUGGCCCAUCACUACGAAUUUGUUUCUGCGUGUUUAUUAGGCCCGAUUGGUGGGAGGAGCCGAACCCAUUACGGGCGGCCCAUCACGCCCAUGCCUCUGUUUAUCUGGCCCAACUGGGGGUCGGAGAUCUAUUCUCCGAACCUCCCUAUCCUGCAAAGUGGAAUAAGUUCAUCUGAGGUCCCUUAAUUUUACGCCAAAUCCGAUUUUCAUGCUUGAACCCAAAACCAGAUAUAACUGGUCCCUAAACUAUCAAAACAGGUACAAAUGAGAUCCCUCGGCGGUUUUGAAGGUGGUUUUGGCUGACGUGGCGUCUACGUGGCUAGUUUGACUAGGUCUCCGUCCCACAUGGCAUUGACGUGGCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
8.74%
HE_num:
HEP:
90.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.61
Avg Expression:
58.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.18182360866003 | 1.33771218547415e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14198133385491 | 0.00649902125960446 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.33668634913953 | 8.3520701590241e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.09697521607762 | 0.0496902460017821 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.74535928755448 | 5.24856890290777e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.68411843205765 | 0.000477805243918692 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.3663914877484 | 3.07888807834343e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.18998447520535 | 3.04604121848489e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.66272565397005 | 0.000101146899500074 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.8042250279755 | 0.0007210088403692 |
| 11 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.41285779637269 | 0.00855008112532521 |
| 12 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.28999490109697 | 0.000967044587247828 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.83425413111556 | 0.00111344215581868 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.81133798765232 | 0.0285060284009068 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.86723732613253 | 6.70389130093869e-15 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.4239586939854 | 0.000470958277845197 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.1950714636013 | 6.52449565975461e-07 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.80752550755417 | 3.73836701224134e-10 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.31837291820715 | 0.0172303788642345 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.08002137452923 | 0.00775244555515689 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.29497864083822 | 0.00473801204096955 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.2472727112772 | 0.0125431551127181 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.51723102627186 | 9.789328065362e-05 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.77046273117714 | 0.000182023372376058 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.00292515748389 | 0.0294639273749638 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.90029377388165 | 1.4610638152329e-07 |
| 27 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.14557805610585 | 2.02405237936745e-19 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.9228246553592 | 3.35009323263244e-06 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.08090127676137 | 0.000790799916007025 |