Chr:
Chr10
Start:
21272236
End:
21272709
Strand:
-
Ref_name:
OSA-LNCN1305
Sequence
(OSA-LNCN1305.1):
UCAGAUGAUCCCAAUCCCUGGAUUUCCUUUUACAGUUUGAAAAUGCUAGUUGAAUUCUUGUCAGAAUAUUUCACAAAAUUUGUUUCAAGAAACGAAUUUGUAAAAGGGCAUGUAGUCUAGUAGUUGCAUUAACGUGAAUAGCACUUUAAGGUCUUCAGUUUAAAUCAACGUAGAAACGAAUUUCAAAUUAGGCAAUUUUAAGGGCUAAGUUUCUAAUGUAAAAUAGUUUCUAAUGUAAAAAAUACCGCAUUUUAUCCGGUUGGAUGUAGAGGUCGGGUAAGAAAAAACCCUUCUCAAGAAAAAAUGAUUCCAGAAACAGAGGAGGAGAAAACAACAUGAAUUUCAGAGGCCAAAAACUGCAGCGAAUGAUUGAUUCGUCUGAACUCUGCUCUUGCGUCUCCGAAAAAUAUAAUCCGGAAUGCUUGGAGAUGAUCAUGGGAGGCCAGACGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.4%
ME_num:
MEP:
51.83%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.92
Avg Expression:
37.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.10585005912582 | 0.0002533647407642 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.44069352714736 | 5.92838885457948e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.65665809224145 | 1.72435872236934e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.16037795345951 | 0.000256541994970204 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 9.01111634461603 | 1.00251980846748e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.26513781613984 | 0.00443875508457312 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.59667445465513 | 3.90935159300831e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.59228736183534 | 0.0205316510553377 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.29013250517458 | 3.05492780101364e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.63125835993329 | 0.000796513075356176 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.30829590150789 | 0.0119017593975562 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.16627648037404 | 0.0321366234435138 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.74384122524481 | 0.0277765674630585 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.00826974744575 | 5.86406435234287e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.97289897188146 | 2.76195700281187e-06 |