Chr:
Chr10
Start:
20748114
End:
20750293
Strand:
+
Ref_name:
OSA-LNCN1290
Sequence
(OSA-LNCN1290.1):
GAGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAAUUUGUUGUCGCCGCAUCCUUCUCCCCUGAUUGAAGUGUUGUCAAGUUUCUCCGAGUUAGUGAAACUGAGUUUGGUUCUUUCUAUUCAGAUACAUUGUUUCCUGCAUGAUCAAUGACUCAAAUCUCAAUGAAGAUAGGCAUAUUGCUAUUCCAGGUUGGUUAUCUGAAUGUGCGCAGGUUUGCAAUUUGCAUAUCAUUGGAUGUAUAUGGUUGAUAACUUGAUAUGGGAGUAAUUGGGAAAUCUGUGAUAAGGUAUGAACCUUCCCUUUUGAAGCAUUUCUACAGCACUAUUGAAGUACCACAUAGUUUUUUUGGCCAUAUUUAUUUAUAACCAUGCAAGGAAUAAUAACUCUUCCUGAUUAGGGCUAAUCUUUUGUACAAAAUCUAUGAUUAACAGAAUUGUUCUAAUUUGAAACAGAGCCCUCUGGUUUAGAGCUUGAUCAGUGAGUUAAAAAAAUUGUAGAAUAUGUGAGUACCGAACAUGUUAUAAUUUGAAGCGCACUCCUCUGAUUGAAAACUUUGACCAGUCAGGUUUGAACUUUGAAUUAUAUCUCAUCUUUAUGCAUAUACUUUCUUUCAUUUCAGGUGAGGGUCAUUUUAUUUAGAGAUUGAUUUGAAAAAAUUGUAGUAAUAACUCUUUCUAAUUAGGGCUAAAUUUUGUAUAAAAUAUUUGAGUAGAAGAAUUGUUCUGACCUAAAACGGAGUCCUAACAUGAUAUCAGUGAGAGUUACAAAAUGGUUGUAAUAUCUGUGAGUACGAGGAUCGUUCUAAUUUGGAACUCAACUCCUCUGAUGACAACUUUAAUCAGGCAGUGUGAAUUAUGCAUUUCUUGUUCUCAUGAACAAUAUUUGUUUGAAAAGUGAAAGAUCGGAGGUAUGUUUUGCCACGGUGGAUGAACAGAAAGCCCGGUGAGGAAGGCAAACAUGGAGUGAAGAGGGUAUGAUGUAUGCUGUGGCCAGAAGAAGUUGCUCCUAUGAUGGAAAUUGUGAGCAAGACAGGCCCUUGAAUCCUUUUUUUUUUCCCUGAUGAAUCUGUAAUUUGGAUAUGCUGCUGGAAUCGGUUGAAAUCUAUUUGUAACUCCACUUUCUCAUUUCCC
Sequence
(OSA-LNCN1290.2):
GAGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAAUUUGUUGUCGCCGCAUCCUUCUCCCCUGAUUGAAGUGUUGUCAAGUUUCUCCGAGUUAGUGAAACUGAGUUUGGUUCUUUCUAUUCAGAUACAUUGUUUCCUGCAUGAUCAAUGACUCAAAUCUCAAUGAAGAUAGGCAUAUUGCUAUUCCAGGUUGGUUAUCUGAAUGUGCGCAGGUUUGCAAUUUGCAUAUCAUUGGAUGUAUAUGGUUGAUAACUUGAUAUGGGAGUAAUUGGGAAAUCUGUGAUAAGUGAAAGAUCGGAGGUAUGUUUUGCCACGGUGGAUGAACAGAAAGCCCGGUGAGGAAGGCAAACAUGGAGUGAAGAGGGUAUGAUGUAUGCUGUGGCCAGAAGAAGUUGCUCCUAUGAUGGAAAUUGUGAGCAAGACAGGCCCUUGAAUCCUUUUUUUUUUCCCUGAUGAAUCUGUAAUUUGGAUAUGCUGCUGGAAUCGGUUGAAAUCUAUUUGUAACUCCACUUUCUCAUUUCCC
Sequence
(OSA-LNCN1290.3):
GAGCGCCGCGGGGUUCAGUCGGCGCCGAUCCCCAAUUUGUUGUCGCCGCAUCCUUCUCCCCUGAUUGAAGUGUUGUCAAGUUUCUCCGAGAUACAUUGUUUCCUGCAUGAUCAAUGACUCAAAUCUCAAUGAAGAUAGGCAUAUUGCUAUUCCAGGUUGGUUAUCUGAAUGUGCGCAGGUUUGCAAUUUGCAUAUCAUUGGAUGUAUAUGGUUGAUAACUUGAUAUGGGAGUAAUUGGGAAAUCUGUGAUAAGGUAUGAACCUUCCCUUUUGAAGCAUUUCUACAGCACUAUUGAAGUACCACAUAGUUUUUUUGGCCAUAUUUAUUUAUAACCAUGCAAGGAAUAAUAACUCUUCCUGAUUAGGGCUAAUCUUUUGUACAAAAUCUAUGAUUAACAGAAUUGUUCUAAUUUGAAACAGAGCCCUCUGGUUUAGAGCUUGAUCAGUGAGUUAAAAAAAUUGUAGAAUAUGUGAGUACCGAACAUGUUAUAAUUUGAAGCGCACUCCUCUGAUUGAAAACUUUGACCAGUCAGGUUUGAACUUUGAAUUAUAUCUCAUCUUUAUGCAUAUACUUUCUUUCAUUUCAGGUGAGGGUCAUUUUAUUUAGAGAUUGAUUUGAAAAAAUUGUAGUAAUAACUCUUUCUAAUUAGGGCUAAAUUUUGUAUAAAAUAUUUGAGUAGAAGAAUUGUUCUGACCUAAAACGGAGUCCUAACAUGAUAUCAGUGAGAGUUACAAAAUGGUUGUAAUAUCUGUGAGUACGAGGAUCGUUCUAAUUUGGAACUCAACUCCUCUGAUGACAACUUUAAUCAGGCAGUGUGAAUUAUGCAUUUCUUGUUCUCAUGAACAAUAUUUGUUUGAAAAGUGAAAGAUCGGAGGUAUGUUUUGCCACGGUGGAUGAACAGAAAGCCCGGUGAGGAAGGCAAACAUGGAGUGAAGAGGGUAUGAUGUAUGCUGUGGCCAGAAGAAGUUGCUCCUAUGAUGGAAAUUGUGAGCAAGACAGGCCCUUGAAUCCUUUUUUUUUUCCCUGAUGAAUCUGUAAUUUGGAUAUGCUGCUGGAAUCGGUUGAAAUCUAUUUGUAACUCCACUUUCUCAUUUCCC
Sequence
(OSA-LNCN1290.4):
UAUUCAGAUACAUUGUUUCCUGCAUGAUCAAUGACUCAAAUCUCAAUGAAGAUAGGCAUAUUGCUAUUCCAGGUUGGUUAUCUGAAUGUGCGCAGGUUUGCAAUUUGCAUAUCAUUGGAUGUAUAUGGUUGAUAACUUGAUAUGGGAGUAAUUGGGAAAUCUGUGAUAAGGCAGUGUGAAUUAUGCAUUUCUUGUUCUCAUGAACAAUAUUUGUUUGAAAAGUGAAAGAUCGGAGGUAUGUUUUGCCACGGUGGAUGAACAGAAAGCCCGGUGAGGAAGGCAAACAUGGAGUGAAGAGGGUAUGAUGUAUGCUGUGGCCAGAAGAAGUUGCUCCUAUGAUGGAAAUUGUGAGCAAGACAGGCCCUUGAAUCCUUUUUUUUUUCCCUGAUGAAUCUGUAAUUUGGAUAUGCUGCUGGAAUCGGUUGAAAUCUAUUUGUAACUCCACUUUCUCAUUUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
50.2%
ME_num:
MEP:
43.9%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.84
Avg Expression:
4.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.19673227385472 | 0.0286503706140976 |