RiceNCexp:Browse

OSA-LNCN1285

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr10

Start:

20086930

End:

20088388

Strand:

Ref_name:

OSA-LNCN1285

Sequence
(OSA-LNCN1285.1):

CACGCAGAUCGCGGUCGUUUUCAAUCGCACCGGCCGCUCGCAUGCGGUCGUCGCCACGGGGGGAGAGGGAGAGGCGAGGGAUACGGCCGAAUCGCGCGCCGUCGUCGCUGCGUCACGGGGUGGUGACACGACGAGUAUCGCGGGUGGAGUUGCGCGAUUGCCUCGUGGGCUAAGGAAGGGGAUUCGGACACAUUUUCCAGAUGAGUAGGUAGACGGGGGAACGCUUCACCCGGUGGGCCAAUGCUUAACGCUAAGAGCAUCUCCGACAGUAUUUUCAAAUACUUAUAUAGUCAACUCUUUAACUGAUUUGGGUAAUCAAACUAAAUGUUCACUUCAAUAGUCUCUCUAUUAACAUCUCCAAAAUAACAAAGGGACCCACAUGUCAGCCUUCAUUGCUUUCUUCUUCCUCCUCUUUCUCUUCCUCUUUCUCUUUCUCUUCUCCCACAUCAGCCCAUCGACGCGCGGCAGCGAUGGAUCCCCGCGCACGCGAGGUGGGCGGCGACGGCGGCGGCGGCUUCCCGCACGCGCGGGCAGCGACGAGGCGGGCGGCUCCCCUCGCGCGCGAAGCAGGCAGCGACGGCGGCGGCGGCUACCAGUGCACGCGGGCGGCGACGAGGCGGGCGGGAACGGCUGCAGCGGCUCUCCGCAUGCGUGAGGCAGGCAAUGACGGCGGCGGCGGCUCCCCGCGCACGUGGGCGGCGAUGAGGCAGGCGGGAACGGCUGCGGCGGCUCCCUGCGCGCGCGAGGCAGGUGGCGACGGCUCCCCGCACGCGCGAGGCAGGCGACGACGGUGGCGAACGACGAGAAAGGCUACUGCAACACCACCGCUGCCAUGGUCCUAUGCUAUUUGGGCAAAGAGAGAGAUGGUAGGAGUGGUGGGGCCCAUGGUUGGCCAGCCAAAAUGACUCUCCAAGUUUGACCAGUGAGUGUUGUGAUUUGGUCAGCCAAAUGGCUUAGGCAACCGAAUAGAAAGACUGUUAGAGGGUAUUUUCUCUUCAUAUUUAACAAAAUUUAGUUUGGAGAGUUAUUUGGCUAUUCUCUUGAAUAUACUAUAAGAUGUGUGAAAUGUUGGCUUGUGUUGGACUACUGCGUCCCGGGCUGAGCUCAUUUUGGUCAGCAAGAGACAAAUGGUCUACUUUAGAUGGUCAGAAUGUGAAGGUAUAUGUGUUAAGUUUGCAGCGUGUUUUUCCGGUCAAUCAAGUGGCAAAUUAUCAAUGGAAAGACAUGCAAAAACAAACUUCACCUACUGUCUACCGAUGCCCAUUUGCUACUAACAUUUCUCCCUCGUUUCUUUCCGAUAGAACAAUACUAAUAUAGAAAAGUGGUGCAAUCGCGCUUUGGCAGAAGUAGCCUCCUAGAACUAGAAGGCUUAAACAAACCAAAAACAGUUUAUAAGAUAUGCUACUCACAAAAUUGUCGUACGGUUGUAAGGAGUACUUGCACCUUCUGGAGAAGGAAC

Sequence
(OSA-LNCN1285.2):

CAAAAUAACAAAGGGACCCACAUGUCAGCCUUCAUUGCUUUCUUCUUCCUCCUCUUUCUCUUCCUCUUUCUCUUUCUCUUCUCCCACAUCAGCCCAUCGACGCGCGGCAGCGAUGGAUCCCCGCGCACGCGAGGUGGGCGGCGACGGCGGCGGCGGCUUCCCGCACGCGCGGGCAGCGACGAGGCGGGCGGCUCCCCUCGCGCGCGAAGCAGGCAGCGACGGUGGCGACGGCUCCCCGCACGCGCGAGGCAGGCGACGACGGUGGCGAACGACGAGAAAGGCUACUGCAACACCACCGCUGCCAUGGUCCUAUGCUAUUUGGGCAAAGAGAGAGAUGGUAGGAGUGGUGGGGCCCAUGGUUGGCCAGCCAAAAUGACUCUCCAAGUUUGACCAGUGAGUGUUGUGAUUUGGUCAGCCAAAUGGCUUAGGCAACCGAAUAGAAAGACUGUUAGAGGGUAUUUUCUCUUCAUAUUUAACAAAAUUUAGUUUGGAGAGUUAUUUGGCUAUUCUCUUGAAUAUACUAUAAGAUGUGUGAAAUGUUGGCUUGUGUUGGACUACUGCGUCCCGGGCUGAGCUCAUUUUGGUCAGCAAGAGACAAAUGGUCUACUUUAGAUGGUCAGAAUGUGAAGGUAUAUGUGUUAAGUUUGCAGCGUGUUUUUCCGGUCAAUCAAGUGGCAAAUUAUCAAUGGAAAGACAUGCAAAAACAAACUUCACCUACUGUCUACCGAUGCCCAUUUGCUACUAACAUUUCUCCCUCGUUUCUUUCCGAUAGAACAAUACUAAUAUAGAAAAGUGGUGCAAUCGCGCUUUGGCAGAAGUAGCCUCCUAGAACUAGAAGGCUUAAACAAACCAAAAACAGUUUAUAAGAUAUGCUACUCACAAAAUUGUCGUACGGUUGUAAGGAGUACUUGCACCUUCUGGAGAAGGAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

346

LEP:

70.33%

ME_num:

136

MEP:

27.64%

HE_num:

HEP:

1.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

pistil

Tau :

0.79

Avg Expression:

1.94

Tip: OSA-LNCN1285 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-2.71679906386008	0.0122935897751713
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-3.06240247171869	0.00235199546842181
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-6.39999060265634	1.27831060871398e-05
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.83154235743688	0.00676457459790061
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-2.63099795656644	0.0135433794905755
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.07245507966959	0.0138206318015096
7	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"	2.61852113774891	0.00442415827258613
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	1.36345699404003	0.0192819259877421
9	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	2.4397204083478	0.00311945097714208
10	BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs	3.44713234298238	6.6025503610131e-13
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-2.20329078807359	0.0108708439987567
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-3.50126473544072	0.000305959791983996
13	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-2.42375546578736	0.0127199639273152
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.73967211443227	0.00217812363928028