RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1278

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

19962575

End:

19971704

Strand:

+

Ref_name:

OSA-LNCN1278

Sequence
(OSA-LNCN1278.1):

AUGCAUGACGCCGACUCCUUCCUUUGGAGCAGCUAGCAAAAAUAGUGCAAUAUAUGGGACCGGACCGGUUCGAUUGUCCUCUCUCCUUUUGAGACCUCUCAAAAUCCAUAGGAAGUCACAGGGAACGUGCGUACACCUAUAGGUCCAGUGCACUUUGUCACGGUGAAAAGACGGGCAAGUUCAAUGAACCAAGCUCGAUCACUACAGGCCUCCUACCCCCGUGAGGUCGUGACUACUACUGGUCAGGUUUAGUCUAAAUUGGCUACCAUGCUAACUUUGGCACAUCAUAUAAGCCUGUAGAAAAGGCAGAGUUCUAAACUUCUAUGUCAGGGCAGUUCUGAACCACAGAAUCAUCAUCUAUCUUGUUAGCUCAAAUUUCAAAUGAGGCCUUGAAUCGUUUCCAAAUUUGGAUGGAAAAGACGGCAUAUGAAAGCCAACAUGAAUUUGGAUGCUGCAUUGACCAAUUGUAGUUAUCUAGUAGGUGGAUGGAUGGCGAUCAAUCCAUAAACCCAUCCCUUGGUGCCAAGCGUUUUGACUAAACCUCGCUUGUCAACAAGGCAAAAUUGCUUUGUACUACUCUUUUCCAAAUACAUGGGUGUGUUUUAUCAAAAAACUAAUAAAAAUACACGGGUGUGUGCAUGAUGCGCACAGGCAUUAACAGGUUCAGUGAUCAGUCAGAUCAGAUCUCCAGGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

21

LEP:

4.27%

ME_num:

79

MEP:

16.06%

HE_num:

391

HEP:

79.47%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.59

Avg Expression:

24.00

Tip: OSA-LNCN1278 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.306479575609110.0209164215173044