Chr:
Chr10
Start:
19532545
End:
19532940
Strand:
.
Ref_name:
OSA-LNCN1270
Sequence
(OSA-LNCN1270.1):
AUUUAACAAUAAAUCAAAUGACAUAAAAAGAAUAAAUAAUUACUUAAUAUUUUGAAUAAGACGAAUGAUCAAACAUGUACUUAAAAAGUCAACGGUGUCAAAUAUUUUGAAACGGAGGGAAUAUAUACCACUCAACAAAAUAUUAAAUUGAAAUCCAAUUCACACAUCGAGAAGAAACAAAUUGAACAUAUGAACAGUAGUGUAUUGUUCACACGCGAAUUUGUCUCUUUUUUUUCUACGUAUAUAGAUCGAAUUUAAACAUGUUUUUUGUGGACUCAUAGAUACUCCAUCCAUCCUAAAAUAUAGCAAUCUUUUGGCGGAUGGGAUAUAUAUAUUUUAGUACUAGAAUCUGGAUAGAAAGCAUGUAUUUAUAGUAUUAUGAUACGUUACAUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
5.49%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
0.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 6.58291167871431 | 1.3454688693378e-05 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 6.49429270892422 | 1.14051397471473e-05 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 6.09420686583983 | 0.000161226694767505 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 5.95612361078346 | 2.80155834172977e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 5.44600016035173 | 0.00266525059776542 |