Chr:
Chr10
Start:
19154234
End:
19155051
Strand:
+
Ref_name:
OSA-LNCN1264
Sequence
(OSA-LNCN1264.1):
GAUUUGAUCAUCAAAUAGAACUAAGGAAAUUCAGCAAGAAGAAACCUCAUCGAUUAUGCAGAGGAUUCGAGCCUUGAGGCACUGGCCUGUCGGAAGCUUCAUACGCCGGGCUGGGAGCACUGACAAAAGGCCGUCCUCUUGUUCUUGGCAACUCGUAGAGCUGCUCCUCUGAAGACGCCUCUGAGUGAUCGUCUUCUUUGUCCUCCAUAACUCUCCUUCCAUGGCUGAAACCAGCAAGCUCUGCAAGAAAGAAGCAUGCCAAGAAGAAGGUGACCAGCAUGCCCCGUCGUAUCGACGGCGGCAGCAGCAGCUUCAUGUAUGUGAGAAGAUUUGGGAGCAGAGUAAGAAGAAGCUGGAAAGGAGGUCAAGAAGAUGGAACUGGAUGGAGUGAGGUCCAACUCUCCAAGGCCAAUCAUGGAUUGAUUUUUAAGUUGAAGGUUCUGUUUCAUGGCUCAUGUGCGCUAGUGUCCACAGUUUUUUUCUAUUCGGGAGCUGGUUGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.37%
ME_num:
MEP:
38.62%
HE_num:
HEP:
12.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.87
Avg Expression:
8.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.19404109598868 | 1.26284008800863e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.06121631292597 | 3.53781523311644e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.74473090803645 | 9.237370116995e-23 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.41744034484674 | 3.75143665058917e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.98131981253207 | 5.26866406916443e-24 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.64352479899212 | 6.79248224279569e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.67926768431762 | 4.54776432122051e-12 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.44335819563728 | 0.0168300248700661 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.01462832697053 | 0.0102962717362218 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.94838809955094 | 3.0663941133843e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.83720069292058 | 6.90140762826653e-14 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.66361210013024 | 0.012325333474418 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.24064040264811 | 6.4318771031453e-15 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.13988133646005 | 0.000913273958324324 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.85222947710615 | 5.00863727305331e-07 |