Chr:
Chr10
Start:
19040376
End:
19040816
Strand:
.
Ref_name:
OSA-LNCN1261
Sequence
(OSA-LNCN1261.1):
AUCUGGUUUCGUGGUCGAGGAAUAAUUUUGUAACUCGAUGACAAGUUGAGGGACCUUUGACCUUUGGUGUACUUUUUUCUAAAAAAAAAGGUGGUGGUCUGCCAUGGAAGGCACUUGGGCCGGAAGCGGGCCAGGGCUGCAGCGGCCCGUUAUCCUUCCACCGUUGGAAGCGGGCGGUACUCGCUGCUCUGUGAAACCAGCCUCACGCAAUACCCGCCACUCUAGGUGCAGGGACGCUCGAGCCUUCGCCCAGGCGCCCCACACACGCUACGCAACUUGGAACGGGCGGGCCGCAUAGUGCAAACCACAGGCGCAGACCCCAAGCGCAAACGACCAGGCAUCCAACACCACCUUAUUGCCCCCGCUCGGGUGACAAGCCAACGCUACCUGGCUCGGCGAGUCAGCAGGUGAGGAGUGAGUAUUUAAGCUGGUGUGGAGCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
11.18%
HE_num:
HEP:
88.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
41953.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.24990930898978 | 2.3587529035354e-06 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.31878142390079 | 8.97667501146733e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.24659629028027 | 0.000304944833018827 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.08929871663786 | 0.00243599577973835 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.55753975589116 | 2.5179349064222e-05 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.94887781450573 | 1.02451304053917e-06 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.14599190120166 | 0.00339012900296999 |
| 8 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.18927262520305 | 0.0172077601008164 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.5195700949028 | 0.039026650418683 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.3243655756511 | 0.000941314359247007 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.1613682319065 | 0.000849018905112619 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.18596977605539 | 0.000129296721070631 |