Chr:
Chr10
Start:
18759942
End:
18762574
Strand:
.
Ref_name:
OSA-LNCN1257
Sequence
(OSA-LNCN1257.1):
GCCCCAUCUGGCCAUUGCAAAGUUGCUUGGCUUUUCUUGCAACUAAUUUUGUAGCCUUUUUUUUUUGCUAUUAUAUGUUGCUUCUUAUCUUAUCCUUUCUCUUUUUGAUGUACAUUUCGUAGGGUUAUUUCGGUUACACUUUAUCCUUUUGCUUUAUUGGUCAUACUUUGGUGUUAUGUAUUGGGUAGAAGUUUUCUAUCUUUUUUUUAGUUUUCUUCAUGGAUGUGUUUUAAGGUUUAGUAAUGGGCUUCAGGAUCCAUGUGAAAAAAAAAGUGAAGCUUGUGGAUUAGAAUUCGAGACAAUAUCAAUUUGACUGCUUUUACAUAAAUAUUUUGCAUGGGUACAAUGUAAUUAAUUUAUAUGAUACUUUGAAGAUAUGGAUCUUAAUUAAAUUGAUUGAACAUCUAUUUUUUGUGGAUCUUUCAGAUAUAGUUUGUUAAUAAGUGAUUCUCAUUCGCAUAUGGCUUUAUCUAAUUAUUUUGUCUUGCAAUCAUAAACAGUGAACAUAUCCAGCUUCUUCUAUUUCGGGUUAUAAAGAUCAUGCUCCAUUCAGACAUGAGUGGUCUCUCCUAAAUUCAAAUACUAUAGCGAAUUCAAAUAUGGCACAAAUAGGAUACAAGCAUAACCGUGCGAAUUUAGACAAUGUUUUGCUUUUAUAGAUGACAAUGAGAAGAUGUGGAUUUUAAUUAAAACAAUAGGACAUCCAUUUUUGUGCAUCUUUAAGAUAGUAAUUUGUUAAUAACCGAUUAUUCCAUUUAACCAUUUCAUUGCGUGUUCAUGAGCAUCUAUUUUUAUUUUAUGAAAUCUGUACAUCAUUCUAGCAUGAGUUGGCUUUCUUAAAUCCAAGUACUUCAGCAAAAUCAGGCACAAACUAGAUACAACCGUAACCAUGUGACAUGAGUUGGUCGAUGUAAGUUGCCACCUGGCCAUGGUCCACAUAAUUAGCUUGAACAUAUAAGUUUUGUUACUCUUCAUUUAAAGGUCCAAAACUAUUAGCUGUCUCAACCAUAAUUCUGAUAGAAUUUUUUUUGGUUGGAUGGUUUAGGUUGGGGCAUGCAUGAGUCCCUCAAUUAGUUGGCAGUACACUGGCCCUAUUCUAAGCUUACCUAGCUGGAACUUGAAUCUUGUCCAAAAGAAAGCACAAGAAAGUAUUGUCUUGUGGGUAGAAUUGGAAUUCUUUUUUCUGUGGAAGUCAAGUGGAACCUGGCCCACCCAUUAAUUUGAUCAUUCCAACUAUGAGAGAUGAUGUGAUAUUGGACAAGGGUAUCUUCAUUGGGGAACACUUGUUUCAUUUUCUUUGAGAAAGGCAUUUGAUCCUGAAUUCCUCCUAGCCUACAUUUGCAAAGUGUAGCAGAGAUGCUGCCAUCCACAAUAAAUAUAGUGGUGGUAGUGUAUUGUAGCAUCUUUGUUUGCAUGCUCUGCGUAUUUGGUUAUUGUUUUCCGCCGUGUUUAGUUCCAAAGUUUUUCUUCAAACUUCUAACUUUUUCAUCACAUCAAAAUUUUUCUACACACACAAACUUUCACCUUUUCCAUCACAUUGUUCCGAUUUCAACCAAACUUUCAAUUUUGGUGUGAACUAAACACAGCCUUCAUCUCACUGCCUAUUUUGUGUGUGCCUUUCUGGCAUUCCUUUUCUGUGAGAGCUUGCUUGGAGAAUGAUUUAAAUAGUGUCUGCCAUUAGUCCAAUAUAUAGAACAAUAAUCCAAUCACCAAUGUGAUGUGUGUACUUAGGGUUACACAUAUAAGCCACUAAAGCAGCAUCUUGAUAAUACUAGCUAGUUUCUAGUUUUGUAGCUGCAUAUAUAGCACGAUGGUGCAAUAAAUAUAGUGCAUAUCCAUUUUUAUUAUGAUGGAAAGAUAUAAACCAUAAGGGCAUGUUUGGUUCGACGUAUCAGCUUGUCGUGGGUCACGCAGUCCAAUGACGUCCUAGACGAGGCAAUCCACCAAAAUCACAUCAUAUGAAGUGAUGGAAAAAAAAAUUGCGAGGUUUUAGCACGAACAACAGACGAUACAAACCCAUGACACAAAUCAAACAUGAUUGUUAGGGGAUCGAAUGAACCUAGCAUAGACCGGUUUCAUCAAACCAGACAACAUCUAAAUUUCUUUCUUGUAAAACAUGCAAGACAUGGAUAACCGUAGUUCUCUUUUGUCAAAUACCGAUGCCUACAAUUGAUUAUUUGUAUGGGCUUCAUUUUCAUAUUAAUUUUAUAAGCUUCAUGGAUUUAUUUAUGACAUCCCUCUAUUCGUCAUAUGUUAAAAGAGUGUGUUACUGGGUGUGGUGUCACUACUGAAGAACUGAUCUUUACUCGGAUGCAAAAAAAAAAUACAUUUAUCCUGGUUCGAAUAGGAACCAGAACUAAAGAUCAUUUCUAGCCACGGUUCAAUAGUUGUCAAGCCCCAACGAUCUUUAGUCCUAAUUGGUGUUACCAAUCCAGACUAAAUAUACUUUCACGGUCAGAUGUGUGCAGUAGGUGGGAUGAUAAUGCAUGUGAGGGCCGAGGUGAGAGAUCUUGAGUCCGAAUCCCACAUCCCACAUAUUUUUUUACUUGGUAUGCAUCUUUAGUCCCGAUUAUUUCAACCGGAAAAUCCCUUUCUCCAGUAAUGUGUGUGUGUUAGGUACAUGUGCAUAGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.72%
ME_num:
MEP:
4.67%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.97
Avg Expression:
0.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.85152051443321 | 8.86001921419533e-07 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 5.12700368208544 | 0.00126362696443736 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 6.59214836602593 | 7.00295183380846e-09 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 6.85343655931801 | 3.91801486023899e-09 |
5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 6.56180533270621 | 3.28157322926028e-09 |
6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 5.77928306448812 | 6.72341101740985e-06 |
7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 6.40268402848001 | 1.71502713295777e-08 |