OSA-LNCN1257


Function Link


Basic Info

Chr:

Chr10

Start:

18759942

End:

18762574

Strand:

.

Ref_name:

OSA-LNCN1257

Sequence
(OSA-LNCN1257.1):

GCCCCAUCUGGCCAUUGCAAAGUUGCUUGGCUUUUCUUGCAACUAAUUUUGUAGCCUUUUUUUUUUGCUAUUAUAUGUUGCUUCUUAUCUUAUCCUUUCUCUUUUUGAUGUACAUUUCGUAGGGUUAUUUCGGUUACACUUUAUCCUUUUGCUUUAUUGGUCAUACUUUGGUGUUAUGUAUUGGGUAGAAGUUUUCUAUCUUUUUUUUAGUUUUCUUCAUGGAUGUGUUUUAAGGUUUAGUAAUGGGCUUCAGGAUCCAUGUGAAAAAAAAAGUGAAGCUUGUGGAUUAGAAUUCGAGACAAUAUCAAUUUGACUGCUUUUACAUAAAUAUUUUGCAUGGGUACAAUGUAAUUAAUUUAUAUGAUACUUUGAAGAUAUGGAUCUUAAUUAAAUUGAUUGAACAUCUAUUUUUUGUGGAUCUUUCAGAUAUAGUUUGUUAAUAAGUGAUUCUCAUUCGCAUAUGGCUUUAUCUAAUUAUUUUGUCUUGCAAUCAUAAACAGUGAACAUAUCCAGCUUCUUCUAUUUCGGGUUAUAAAGAUCAUGCUCCAUUCAGACAUGAGUGGUCUCUCCUAAAUUCAAAUACUAUAGCGAAUUCAAAUAUGGCACAAAUAGGAUACAAGCAUAACCGUGCGAAUUUAGACAAUGUUUUGCUUUUAUAGAUGACAAUGAGAAGAUGUGGAUUUUAAUUAAAACAAUAGGACAUCCAUUUUUGUGCAUCUUUAAGAUAGUAAUUUGUUAAUAACCGAUUAUUCCAUUUAACCAUUUCAUUGCGUGUUCAUGAGCAUCUAUUUUUAUUUUAUGAAAUCUGUACAUCAUUCUAGCAUGAGUUGGCUUUCUUAAAUCCAAGUACUUCAGCAAAAUCAGGCACAAACUAGAUACAACCGUAACCAUGUGACAUGAGUUGGUCGAUGUAAGUUGCCACCUGGCCAUGGUCCACAUAAUUAGCUUGAACAUAUAAGUUUUGUUACUCUUCAUUUAAAGGUCCAAAACUAUUAGCUGUCUCAACCAUAAUUCUGAUAGAAUUUUUUUUGGUUGGAUGGUUUAGGUUGGGGCAUGCAUGAGUCCCUCAAUUAGUUGGCAGUACACUGGCCCUAUUCUAAGCUUACCUAGCUGGAACUUGAAUCUUGUCCAAAAGAAAGCACAAGAAAGUAUUGUCUUGUGGGUAGAAUUGGAAUUCUUUUUUCUGUGGAAGUCAAGUGGAACCUGGCCCACCCAUUAAUUUGAUCAUUCCAACUAUGAGAGAUGAUGUGAUAUUGGACAAGGGUAUCUUCAUUGGGGAACACUUGUUUCAUUUUCUUUGAGAAAGGCAUUUGAUCCUGAAUUCCUCCUAGCCUACAUUUGCAAAGUGUAGCAGAGAUGCUGCCAUCCACAAUAAAUAUAGUGGUGGUAGUGUAUUGUAGCAUCUUUGUUUGCAUGCUCUGCGUAUUUGGUUAUUGUUUUCCGCCGUGUUUAGUUCCAAAGUUUUUCUUCAAACUUCUAACUUUUUCAUCACAUCAAAAUUUUUCUACACACACAAACUUUCACCUUUUCCAUCACAUUGUUCCGAUUUCAACCAAACUUUCAAUUUUGGUGUGAACUAAACACAGCCUUCAUCUCACUGCCUAUUUUGUGUGUGCCUUUCUGGCAUUCCUUUUCUGUGAGAGCUUGCUUGGAGAAUGAUUUAAAUAGUGUCUGCCAUUAGUCCAAUAUAUAGAACAAUAAUCCAAUCACCAAUGUGAUGUGUGUACUUAGGGUUACACAUAUAAGCCACUAAAGCAGCAUCUUGAUAAUACUAGCUAGUUUCUAGUUUUGUAGCUGCAUAUAUAGCACGAUGGUGCAAUAAAUAUAGUGCAUAUCCAUUUUUAUUAUGAUGGAAAGAUAUAAACCAUAAGGGCAUGUUUGGUUCGACGUAUCAGCUUGUCGUGGGUCACGCAGUCCAAUGACGUCCUAGACGAGGCAAUCCACCAAAAUCACAUCAUAUGAAGUGAUGGAAAAAAAAAUUGCGAGGUUUUAGCACGAACAACAGACGAUACAAACCCAUGACACAAAUCAAACAUGAUUGUUAGGGGAUCGAAUGAACCUAGCAUAGACCGGUUUCAUCAAACCAGACAACAUCUAAAUUUCUUUCUUGUAAAACAUGCAAGACAUGGAUAACCGUAGUUCUCUUUUGUCAAAUACCGAUGCCUACAAUUGAUUAUUUGUAUGGGCUUCAUUUUCAUAUUAAUUUUAUAAGCUUCAUGGAUUUAUUUAUGACAUCCCUCUAUUCGUCAUAUGUUAAAAGAGUGUGUUACUGGGUGUGGUGUCACUACUGAAGAACUGAUCUUUACUCGGAUGCAAAAAAAAAAUACAUUUAUCCUGGUUCGAAUAGGAACCAGAACUAAAGAUCAUUUCUAGCCACGGUUCAAUAGUUGUCAAGCCCCAACGAUCUUUAGUCCUAAUUGGUGUUACCAAUCCAGACUAAAUAUACUUUCACGGUCAGAUGUGUGCAGUAGGUGGGAUGAUAAUGCAUGUGAGGGCCGAGGUGAGAGAUCUUGAGUCCGAAUCCCACAUCCCACAUAUUUUUUUACUUGGUAUGCAUCUUUAGUCCCGAUUAUUUCAACCGGAAAAUCCCUUUCUCCAGUAAUGUGUGUGUGUUAGGUACAUGUGCAUAGGUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

466

LEP:

94.72%

ME_num:

23

MEP:

4.67%

HE_num:

2

HEP:

0.41%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf

Tau :

0.97

Avg Expression:

0.50

Tip: OSA-LNCN1257 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2565.851520514433218.86001921419533e-07
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP22865.127003682085440.00126362696443736
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2796.592148366025937.00295183380846e-09
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L86.853436559318013.91801486023899e-09
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_126.561805332706213.28157322926028e-09
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS1055.779283064488126.72341101740985e-06
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73426.402684028480011.71502713295777e-08