Chr:
Chr10
Start:
18642040
End:
18645393
Strand:
+
Ref_name:
OSA-LNCN1254
Sequence
(OSA-LNCN1254.1):
AGCCACCUGUCUUCCCCGCCCUAGCACGUCUCUUUUCCUUCCCUCUCUUCCUCCCGGCUCCCUAAGGCCUCCUUUGGCAGCCCGGGAUCCCGGUGGGAUCCCCGCCCAUUCCCCUGGGAGAAAGGCCCGCGGUGAAAAUUUUCACGGGCUUAUUUCCUGUCCAUUUGGAAGCCCACGAGGCAGGGAUUUCCCAGCCCAAUCCGCGGGGAAGCCCUAGGGAAAGGACCCCGACCUCCGGAGAUCGGGAAUUUUUCCUCGCGCGAUCCGCCGCCGCUUCUCUCUCGCGCGGAGUCUCUUCUCUCGCGCGCAACCAAUGUUGGGCGCCGCCGCGCCUCCUCCUCCGGCGAGACGCGCCACCGCCGGGACUCCUCCGGCGAGACACCACCAGCACUGCCACCGUACUAGGCUUCUCUAGAACAGCCACCGUCAAUCUUGCUCCCACCUGAAGCAACACGACGCGCUCUCUCCAGUGGCAGUGCGCCAGUGCCCCAUCCCCCAGGUCAACCUCGAUAGCCACCAAGAGCGGUUCUCCAGUGGCCGUCACUAAGCAUCGCCAGCACCGUGACUCAGUUCGACUGGUUCAUAUGCUUUAACACAUAAGCUACGUGGUAAAUUAAACAACAUUGAUUAAGAAGGGAACACACGCGUUCACUGCUUCGACAGAUCAACUACAAGAAUUGUCAAGCAACAGGCCUUGCCCUUGUAUAUUCAGCCUUGUUCUCAAUUUGGAGCAGCGAUGGAGAUAGUUGAUGCUUAUGAAUGCAGGAGGAAAACACAUCCAAGAUAUUUGUAAAUGAUAAUUGUAUGAUUAUAUCUUGUAUUUGCUGAAAGUGAUAUUUCUUGGAUGCUCAUAUAAUACUUGGCUAAAUACUGUAGAUGGUAGCUCAAUUUGAUCAUCUCAUGAAUUAAGUUGAUGCUUGUAUCUAUAAUGUUCUCUAUUUUACCUAGAAUUUAUUGCUCUAAUUGGAGUUCAUAUGAUUUUUCAGAUUUUUUUUCUUGCAUUUUUAACUUAAUUAUUCUAUUUUUGUGCUCAGUUAUGUUUAUUUAGACAUUUUUUUUAUCUUGUUGUGUGUGCUCCAACUAGCCAUUAUUUGGUAGAGUAGGCUCAAAAAUUAAAAACCCUAAUCAUCCCCCAGUCCCGUGAGCUGCUUCCAAAUGGUAGCAGGGAAAUCUCCCCUAGCGGGAAGUGCUUCCCUAGAUAUUUUGGGGGGAUUCACUUGGUACAGGGAAAAUCCCUGUAUGGGGUUUUUUCCCAGGGGUUUUCUCCCCGUGCAUCCAAAGGCAGCCCGGGAUCCCACCGGGAUCCCAGCCCAUUCCCUGGGAGAAAGGCCCGUGGGGGAAAUUGUCACGGGUUUUAUUCCAUGUCCAUUUGGAAGCCUGUGGAUUUCCUGGCCCAAUCCGCGGGGAAACCCUAGGGAAAGGUCCCCGACCUCCGGAGGUCGGGAAUUUUUCCUCUCUCGAUCCGCCGCUGCUUCUCGCUCGCACAACCGGAGUCGCUUCUCUC
Sequence
(OSA-LNCN1254.2):
GAGGCAGGGAUUUCCCAGCCCAAUCCGCGGGGAAGCCCUAGGGAAAGGACCCCGACCUCCGGAGAUCGGGAAUUUUUCCUCGCGCGAUCCGCCGCCGCUUCUCUCUCGCGCGGAGUCUCUUCUCUCGCGCGCAACCAAUGUUGGGCGCCGCCGCGCCUCCUCCUCCGGCGAGACGCGCCACCGCCGGGACUCCUCCGGCGAGACACCACCAGCACUGCCACCGUACUAGGCUUCUCUAGAACAGCCACCGUCAAUCUUGCUCCCACCUGAAGCAACACGACGCGCUCUCUCCAGUGGCAGUGCGCCAGUGCCCCAUCCCCCAGGUCAACCUCGAUAGCCACCAAGAGCGGUUCUCCAGUGGCCGUCACUAAGCAUCGCCAGCACCGUGACUCAGUUCGACUGGUUCAUAUGCUUUAACACAUAAGCUACGUGGUAAAUUAAACAACAUUGAUUAAGAAGGGAACACACGCGUUCACUGCUUCGACAGAUCAACUACAAGAAUUGUCAAAGAAUCAUUUUUGCUGGAGUUAUUAGGAACAUUUUAUGUUUAGCAAUAGUAUAUGUUCUGAUAUCUUCAUGAAAUUCAUUAUUAAACUGACAACAACCCUUCAAAGCUGAACACUAUAUCGCUCAUCCAUUAGACCAGCUAAUGCUACUACUAUUUUUUUUUCUGAGGAGCCAAAUUGCUGCAUAGGUAUGUCUGAUGGCCCUACAAUUUAACUUGAAAGCUCUGCUAUUUGUAUACUUGAUUCAAUUUCAGCAGAUGUAAAUUUUACAACUCUUUGUAUUCAGUUAAUCUGGUUUAAUUCUUCUCUAUUCUUGAUGGUCCUAGCUUAGCUUAAUUCUGAUUAAUUAUUGUAGUCUCUGUCAGGGAACCGUAUAAUUAGUGAUUAAUUUAGCAUGCAUGUGAGACUAAAUAAAUGGUAAAAAACAGAUUUUUGAUAGGACCUCGCUGGCCAAACAAAGUGACCUAGUAGUACUAAUUAAUUAAAACAACAACUACUACUACUAAUUAGUACUGCUAAGUGCUAACCAUAACUAUCUACACUAAUGACAGUGUUUGUGUGCUUGCUUGGGGGCAUAAAACUAAGAGACAGAGUUAGCUGGAGAUGGCCACGGUCCGUCUGAAGCAUUGCGCAUUAAUUUGCAUCUCAAACUGUAGUAGCAUGAGGCUUUAAUCUGUCUAAUCAGUUUGCACCUAAACAGCAGCUCAAUGGCACUGCAGUUCAGCUGAAAAUGUUGCAAAAGUUUACCUAAUGAGGACUCACAUAGGGGGUAUAUAUAUGAGAUGCACUUCUUUUCCUUGUCAUGUCCAUAAUGAUAAUUGUCCUCUUGCACUCUUCCUCUUGCCAUGAUUCAAUUUGAAUCUCUGGAUUGGCAUAAACAAGGAUUGUCCCACACAGAGCUAUACUCUAGUCUGCAUUUUCUAUACAAGAAGUACUUGAAUGAUUUUUUUUCUACCAACGCUACAGGUUGCACCCUUACUUGUGUUUUUAAUUCUUGGAUGUAGGCAACAGGCCUUGCCCUUGUAUAUUCAGCCUUGUUCUCAAUUUGGAGCAGCGAUGGAGAUAGUUGAUGCUUAUGAAUGCAGGAGGAAAACACAUCCAAGAUAUUUGUAAAUGAUAAUUGUAUGAUUAUAUCUUGUAUUUGCUGAAAGUGAUAUUUCUUGGAUGCUCAUAUAAUACUUGGCUAAAUACUGUAGAUGGUAGCUCAAUUUGAUCAUCUCAUGAAUUAAGUUGAUGCUUGUAUCUAUAAUGUUCUCUAUUUUACCUAGAAUUUAUUGCUCUAAUUGGAGUUCAUAUGAUUUUUCAGAUUUUUUUUCUUGCAUUUUUAACUUAAUUAUUCUAUUUUUGUGCUCAGUUAUGUUUAUUUAGACAUUUUUUUUAUCUUGUUGUGUGUGCUCCAACUAGCCAUUAUUUGGUAGAGUAGGCUCAAAAAUUAAAAACCCUAAUCAUCCCCCAGUCCCGUGAGCUGCUUCCAAAUGGUAGCAGGGAAAUCUCCCCUAGCGGGAAGUGCUUCCCUAGAUAUUUUGGGGGGAUUCACUUGGUACAGGGAAAAUCCCUGUAUGGGGUUUUUUCCCAGGGGUUUUCUCCCCGUGCAUCCAAAGGCAGCCCGGGAUCCCACCGGGAUCCCAGCCCAUUCCCUGGGAGAAAGGCCCGUGGGGGAAAUUGUCACGGGUUUUAUUCCAUGUCCAUUUGGAAGCCUGUGGAUUUCCUGGCCCAAUCCGCGGGGAAACCCUAGGGAAAGGUCCCCGACCUCCGGAGGUCGGGAAUUUUUCCUCUCUCGAUCCGCCGCUGCUUCUCGCUCGCACAACCGGAGUCGCUUCUCUC
Sequence
(OSA-LNCN1254.3):
CCUCGCGCGAUCCGCCGCCGCUUCUCUCUCGCGCGGAGUCUCUUCUCUCGCGCGCAACCAAUGUUGGGCGCCGCCGCGCCUCCUCCUCCGGCGAGACGCGCCACCGCCGGGACUCCUCCGGCGAGACACCACCAGCACUGCCACCGUACUAGGGUUCAUAUGCUUUAACACAUAAGCUACGUGGUAAAUUAAACAACAUUGAUUAAGAAGGGAACACACGCGUUCACUGCUUCGACAGAUCAACUACAAGAAUUGUCAAGCAACAGGCCUUGCCCUUGUAUAUUCAGCCUUGUUCUCAAUUUGGAGCAGCGAUGGAGAUAGUUGAUGCUUAUGAAUGCAGGAGGAAAACACAUCCAAGAUAUUUGUAAAUGAUAAUUGUAUGAUUAUAUCUUGUAUUUGCUGAAAGUGAUAUUUCUUGGAUGCUCAUAUAAUACUUGGCUAAAUACUGUAGAUGGUAGCUCAAUUUGAUCAUCUCAUGAAUUAAGUUGAUGCUUGUAUCUAUAAUGUUCUCUAUUUUACCUAGAAUUUAUUGCUCUAAUUGGAGUUCAUAUGAUUUUUCAGAUUUUUUUUCUUGCAUUUUUAACUUAAUUAUUCUAUUUUUGUGCUCAGUUAUGUUUAUUUAGACAUUUUUUUUAUCUUGUUGUGUGUGCUCCAACUAGCCAUUAUUUGGUAGAGUAGGCUCAAAAAUUAAAAACCCUAAUCAUCCCCCAGUCCCGUGAGCUGCUUCCAAAUGGUAGCAGGGAAAUCUCCCCUAGCGGGAAGUGCUUCCCUAGAUAUUUUGGGGGGAUUCACUUGGUACAGGGAAAAUCCCUGUAUGGGGUUUUUUCCCAGGGGUUUUCUCCCCGUGCAUCCAAAGGCAGCCCGGGAUCCCACCGGGAUCCCAGCCCAUUCCCUGGGAGAAAGGCCCGUGGGGGAAAUUGUCACGGGUUUUAUUCCAUGUCCAUUUGGAAGCCUGUGGAUUUCCUGGCCCAAUCCGCGGGGAAACCCUAGGGAAAGGUCCCCGACCUCCGGAGGUCGGGAAUUUUUCCUCUCUCGAUCCGCCGCUGCUUCUCGCUCGCACAACCGGAGUCGCUUCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.95%
ME_num:
MEP:
4.47%
HE_num:
HEP:
73.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.65
Avg Expression:
22.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.30981386863875 | 1.55747147596551e-16 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 6.11303973046089 | 4.86799715089583e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.38607069937602 | 6.81099926464551e-21 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.01612062668507 | 1.43992885437754e-09 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11087554273943 | 0.000448447727669986 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 4.85461081138541 | 1.75010147220786e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.5129304849488 | 2.64078914425567e-25 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.19327873240035 | 9.09255515670087e-19 |