RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1243

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

18138575

End:

18138928

Strand:

.

Ref_name:

OSA-LNCN1243

Sequence
(OSA-LNCN1243.1):

GCCUGAACUUUUAUUGAAAUGAAGAAACAUUUACAGGAGAGGUGUUACAGGGGGUGAGAAGGAAGAAAAAAGAAUUAAAAAAAGAAAGAAAGAAUUAAGAGAUAGUUACAUAGGGGUAGGAGGCCCAGUUACGGAGCUGUUGCUUGCUCUCAGUAUUUUUACAUCGGUGGGACCAAAGAUCAAUGUCACUAGCACAAUGUUGGAGAACAAACGAGGCGGGAUCGUCAAUGGAAUUGAAGACCUUAUUGUUGCGGCGUUUCCAAAUACUCCACAUGACGGCAAGCAGAAUAGUGCGCCAGACUCUUGGAGUGGCGGGUUGUCCCGGCGGAGGAAUGUCCCAGACACCUUCAAGCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

472

LEP:

95.93%

ME_num:

15

MEP:

3.05%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.98

Avg Expression:

2.86

Tip: OSA-LNCN1243 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)-6.622196975840230.0478379462106044