Chr:
Chr10
Start:
18126955
End:
18128157
Strand:
.
Ref_name:
OSA-LNCN1242
Sequence
(OSA-LNCN1242.1):
GGGAGAAGGGGAGUGAUCCAAACAUUGACAAAGAUAGCUCCUUGUUGACAUACUCCCUUCGAGGGAGUAUAGAAGAGUUAGGAGGAGAGAUAGAGGUGGUGACGUUCUUGAUAGAUGGAGAGGGAAGGAGGUGGCGGGGUUUGUAUACGAAGUAAGAAUCGAUCAUGAGGAGAGGACUUGAGGAGUGUUGGGUUUAGGAUUACAUUAAAAGUUUGUAACCAUUUAAAAGUGAGCGUUGUAUAAGGAAAAAAAAGUAACCAAUUGACAAGUAGACCAUCCUAAAUGGGCCAAUUUGCUCCCUACCAUCGUAAAAAUUAUGGUCUCGAAAGAUAUCUUCAUAUAUAUGUCAUGAAUAUGUGGAUUCGGGUCCCAUAUAUAAUUCUCAUCGUAUUUUGCAACUCACGUGUCCUACAUUAGUGUUCUUCAACAAAUUUUCAUCCAAAUCAACCAAAAAGAACCAUAUACUAAUUAGGGUGUGUUUAGUUCAUGCUAAAAUUAGAAGUUUGAUUGAAAUUGGAACGAUGUGAUGGAAAAGUUGGAAGUUUAUGUAUGUAGGAAAGUUUUGAUGUGAUGGAAAAGUUGGAAGUUUGAAGAAAAUUUUGGAACUAAACUCAGCCUAAAUUAAGAUAUGGCAGUUGAGUAAAUUGACAUGUGUUUAGUUCACGCUAAAAUUGAAAGUUUUGUUGAAAUUGGAACGAUGUGUGGAAAAGUUAGAAGUUUGUGUGUGUAGAAAAGUUCUGAUGUGAUGUAAAAGUUGAAAGUUUGGAACUAAACUCGUCUGUUGUUUCAUCCCGUUUAUCUGUUUGGUUUUGACGUCCGUAUGCCGUCUCCUUCCAAUUCCAUCCCUAGCUCUACCUACCACGCGCUGCCAAACUCUUCCUGCCCCAGCCGGUCCUCCACCUCUCGGUCCCUCUUCUGCUGCGACCGAGUCAGUCGAGGCUCGCGGCUCCGAACCACCACGUACGAUCUCCGCGGAAAAGCUGGGUCGCGUUGGCAGGCAGCGACUUGUUCACCCCGUACUCCGCUCCGCCACCAUCAGUCCAUCACCACGCACAGCGACCUUUUUGUUUUUUUUUUACGUUUUAAAAGUCCCAAACAGAAAAGGCAAAACAAAAAAUAAAAAGAAGAGUCCACGACUCCGUAUGUCAAGUCUACUCACACACCCUUUUUUUUUCCCUCUCGUGUCAGUGUCAGAGAAUACGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.48%
ME_num:
MEP:
6.5%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.73863186998672 | 0.0102224276307364 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.73266415685412 | 0.0023234345211979 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.8442756742364 | 0.00015626790547091 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.09381068841575 | 0.0019833893165217 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.81617014174729 | 0.0361004532116 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -4.72086626880834 | 0.00545834413751461 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.10390651932322 | 0.00760442079942767 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.17330738249553 | 0.0199876969259652 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.65712994807938 | 0.000209974061765318 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.17096520074527 | 0.000567367494732806 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.73327985520926 | 0.00995169073958589 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.30820125075682 | 0.000285747928058305 |