Chr:
Chr10
Start:
18018042
End:
18018459
Strand:
-
Ref_name:
OSA-LNCN1241
Sequence
(OSA-LNCN1241.1):
GCACACUCAUGUCACUAUGUCAGCUAGGAUCGAUAAUCUUAUUUCCAAAAUCUGAACCUUUUAUCCACAGUCAAGUCAUUCGUAAUGGGCGUGACAAUUUUAUCAUGACGUGGCAAGACAACAUUGUCACACCAUUUAGAUUGGUGUGGCAACGUUGUUUUGCCACAUCAGAUUGGUUGGCGUGAUCAAGAGGUUUAGAUAUUUUUUUUUACGCAAAAAAGGGUUCAGAUAUUAAAAGCUACUCCCUCCGUUUCUAAAUAUUUGACACCGUCGACUUAUUAGCACAUGUUUGACCGUUCGUCUUAUUCAAAAACUUUUAUGAAAUAUCAAAAGAAUUAAUAAUUACUUAAAUUUUUUAAAUAAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.01%
ME_num:
MEP:
30.69%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.88
Avg Expression:
7.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.63899082089948 | 0.00199916523128697 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.80913514257505 | 0.00042011704854805 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.11061826702182 | 4.66416047228364e-06 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.30356519676404 | 0.0340066907454487 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.88156841631842 | 0.0353481650357939 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.72947380511912 | 0.0269908755227378 |