Chr:
Chr10
Start:
17471600
End:
17475228
Strand:
+
Ref_name:
OSA-LNCN1237
Sequence
(OSA-LNCN1237.1):
GUGCGGAGACGAUGCGGUGCGGCCGCGAGGCAGCAUGCCGACGAGGCGCGCGGCCGGCGACGAGACAACACGAUGAUGAGGGGGACCAGCGACGAGGCGAGCGGGAGGGAGACCGACGCCGUCGUCGUGUUGUGGUGAGGAGGCCACACAACGACGCAGACGAGCGAGCGAGGGGAGUGGACGGGAGGUUGGCUACGGCGCGGGUGGCGCACAACGACGCGGAUGAGCGAGGGGAUUUCGCUGGAUAUGCACCAUUGAGCAUGUAUCGAUGUAUAAGAUUGAUUGAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
21.75%
HE_num:
HEP:
77.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.55
Avg Expression:
21.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.18665263726074 | 0.0498198624155942 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.60222316701322 | 0.0234476897337133 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.74678238532938 | 0.00493131261827701 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.59802468446654 | 0.0187898735316646 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.84943600876779 | 0.00276836936978868 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.01239313556963 | 0.00293677830226227 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.46697963301287 | 0.0182995950323619 |