Chr:
Chr10
Start:
17194248
End:
17194716
Strand:
+
Ref_name:
OSA-LNCN1232
Sequence
(OSA-LNCN1232.1):
CAAAAGAAAUGAAUGCUACUACAUGUCCACUCCACACUGUGGUUUCUGUUAAAAAGCUAGCAUGAAAUUUAUCAUUUCGUUAUUACAAGUGACAUGAACUAGAGGUACAUGUAUUCAUAGACAAAUAGGCAAGUACAGAUGGGGAAAGAAACACAUGCACUUAAAUCAAACCACUUCCACAUCAUAACAAAAUGACUUAUUACGAACAGUUUCCCCCAAUUACGAGAACAUUUCAUCUCUAUAUACAUAGCCUACAAACAUAACAAUUGAGCUGCUCCUAUUUCAUGCACAGAAUGCAAUAAAUACAGAUCAAAAUUUUAGUAAUAAGCAAUUAAGCCAAAAUACCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.04%
ME_num:
MEP:
52.03%
HE_num:
HEP:
32.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.62
Avg Expression:
6.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.29711647276303 | 0.00378927133083853 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.24292333563179 | 0.0021070045092173 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.07944953252408 | 0.00768213884641822 |