Chr:
Chr10
Start:
17164673
End:
17165644
Strand:
-
Ref_name:
OSA-LNCN1228
Sequence
(OSA-LNCN1228.1):
GCCAUUAUAAAUUUGGUGGUUUUAAGAUACACCAUUACUAUUCAUCUAUUUAUAGCAAUACCAUUACAAUUUUAUAAAUAUUAGAGAUAUGCCACUAAAUACCCUUUCACCAUAUUUUAUAAAAAUUUUAGACCAAAAUACCUAUGCCUUCUUUCUUCCUCCUCUGUCUUCUAUUCCAGCCAACUUACACAAGCUCAUGAAGAGCUGCAGCAGGCUGAGGGCUGCCGCCGCUGCCGGCAGAGCUGGAAGGGAGCACGCCACCGGGACUUGCUACCCAGCCACCGGAUCAAGUAGCAAAAGCUACGGAGCACGCCGCCGGGGGUCUCGCCGUUUGGCCGCUGUCGCCACUGCAUCGGAUUCCUCCAUACAUGCGAAGAGGGUGGCACGGGGACGACGGUGCUCGCCGGCGGCGUGAAUAUCCUCUCUCUCUCUCUCUCUCCUCGGCUUACAACUCGGCUCAAGCGUAUGUAUCCCCUCCUCCUCUGUGCUCGACGACGCCUCUACACGGUGCUGCUCGACAUCCACCAGCCAUGCGUGUGCAUCUCGGAGCAGCAGGCUGAGCUUGGCGGUGGACAAGGAGAUCGAUGAACAAGAGAGAAGAUAUGGAGUGAGAUGGGAGAUGAAGGAAGAAGAAGAGGGUAGUUUAAUUUAGUCCUAAAAAAAUAGAAAAUGUAGAGAAAAGCUAUGUAGUGGCAUAGCUCUAAUAUUUGUGAAAUUAUAAUGAUACGGUUACAAAUAGGUAAAUAUGAAUGGUAUAUUUCAAAACCAUUAAAUUUAUAAUAGCAUGAUCCAAAUAUCCAAUUAACCCAAAAAAGUAUGCUACAAGCACAUGCGUUGACCCAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
31.91%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
2.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.33872725191691 | 0.00892045284632791 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.31347972050517 | 1.08356317068235e-06 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.42198834718931 | 0.010878343532848 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.75907396854605 | 0.00411005112702553 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.64187424230665 | 0.0446638369335567 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.32454545387967 | 1.97243383369267e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.44819424229021 | 0.0356294095755905 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.087226652904 | 0.00117175990223378 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.77610846067572 | 0.01866209076631 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.56396628398914 | 0.0173459755400942 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.07779222943661 | 0.0051464085143737 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.56408950662118 | 0.0176284652797349 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.56414269568471 | 0.0173835542593451 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.75430006666283 | 0.0462264579772646 |