Chr:
Chr10
Start:
16091344
End:
16096083
Strand:
-
Ref_name:
OSA-LNCN1211
Sequence
(OSA-LNCN1211.1):
CUUCAUUAGGUUGUGAUCUGGAAACAUAUUUCACAGCUUACAAGGCACCCAAUAAGUUCUCAUGGGAAUUGGCACAACAGUACAAGAGUGUAAGACCAAUGAACUAAAGCAUAAACCGUAUCAACCUAAGUGCAGCUUACAAGACUACAAAAGAGAUUCACAGUACACCUUUUUGCCUUUUCUUAACAAAAGGUUGCCAUAUCAACCAUAUCAUAUAUGCUGACACAAACAUGUGAAAACAAUUACAUAUAAUUCCAUUCCUAAUCCUUAGUGACAUGACUAAAACUAUCAUCUCGACUUGCCAUGACAUCUAGUCAGAUUCAUAACACAACAUCGACUUGCUUAUUGUUGUAUAAUCCUUGUAUUAUAAGCCAUAUUAUCCUAUAAUCCUUGCAUUAAGCUUCUCCAGUUCUCCUGUUAUAGUCGUCCUGGGAAGGGUUCUGAAUUGUUUCUACUUUUUUGCAAACCUCAUAAAAAAACUUGGCACAGAAGCAUGAAGGGAUUGACUGAUUACUGCAGCAGCAGCAAAAAGUAUGAUUGGGUUUACUACAGAAUUAUGCUUAGCAACAUAUAUUACAGCACCCUACUUGCUGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
68.7%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.75
Avg Expression:
5.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.3743142501401 | 0.00280503396040701 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.32230064639974 | 0.000277547827001348 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.05169954330372 | 0.0194888332074602 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.81606628458912 | 0.000231099253703953 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 4.84679738864364 | 0.0494961880822119 |