RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1206

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

15844364

End:

15849001

Strand:

+

Ref_name:

OSA-LNCN1206

Sequence
(OSA-LNCN1206.1):

CCAACUUCAUCCGGUGAAGGCACGGCCGUGCAGUCUUCACUUAUCCACCGUUCAUGCAGCAAGAAGAUGGAAUGGCAAAGCUUCAAUAUGAUGCCCAGGACGGCGGCGGUGGCGAUGGCGAGUUGGCGACAGUGGUGGCGGCACUACGCGUCUACCGAACUGACUCUGGAGUCUAGAGUACUUGUCUCUUGUUGAGAUGCCGUGGGCUGUCAGGAACUGAUUUUAACAGCAGUUAAGUGUGCGUGACCCGUGAGCCGUUGGAUUGUAUGGACGGUGGAUAAGUGAUGACCGCACGCUCGUGCCUCCACCCCUUGUUAUAAGAGGUUAUAUAAGGCCAUCCCCAACCCAGAAACCAUCUACUAGUUUCCAUACUUGCCAUGUCAUAUAGACAUUAUGCAUAGAAACUACCUAUUCAAUGGAUGUUGUCUUCAAAUUAAAUUCUCAUCCAAUCAUCUAUAUUCUCUCUCCUUUUAUUCACCUAUCAUCUUGUUUUCAUUUUUGGUUCUUAUGUAGAGAUGAUUUCUUGUAUGAGAAAUGGUUUCUUCGUCUUUUUACCUUCUCCUCAUUAACUCUCUU

Sequence
(OSA-LNCN1206.2):

CCAACUUCAUCCGGUGAAGGCACGGCCGUGCAGUCUUCACUUAUCCACCGUUCAUGUAAUCCAAGAUCCAACGACUCACGUGCCAUGCCCAUUUAACUGCUGUUGAAAGUAACCAGUCCAUGGCAGCCCACCAAGAAGCACUCAUGAGUCAUGAGUCAAUCGAUGACGCAUUGACGCCUUCUUGUCACCGCUGUCGCCGCCGCCGAUGCCGUCUGCCGACACGCACGCGUCGUCACCAACCGUCGUCUAGGCCCAACUAUUUGUUGUUGUUCUUCAAUUUUUGGGGCAGCAAGAAGAUGGAAUGGCAAAGCUUCAAUAUGAUGCCCAGGACGGCGGCGGUGGCGAUGGCGAGUUGGCGACAGUGGUGGCGGCACUACGCGUCUACCGAACUGACUCUGGAGUCUAGAGUACUUGUCUCUUGUUGAGAUGCCGUGGGCUGUCAGGAACUGAUUUUAACAGCAGUUAAGUGUGCGUGACCCGUGAGCCGUUGGAUUGUAUGGACGGUGGAUAAGUGAUGACCGCACGCUCGUGCCUCCACCCCUUGUUAUAAGAGGUUAUAUAAGGCCAUCCCCAACCCAGAAACCAUCUACUAGUUUCCAUACUUGCCAUGUCAUAUAGACAUUAUGCAUAGAAACUACCUAUUCAAUGGAUGUUGUCUUCAAAUUAAAUUCUCAUCCAAUCAUCUAUAUUCUCUCUCCUUUUAUUCACCUAUCAUCUUGUUUUCAUUUUUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

458

LEP:

93.09%

ME_num:

28

MEP:

5.69%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.97

Avg Expression:

1.37

Tip: OSA-LNCN1206 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2564.773708792229730.0203655306757015
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP22865.653453422491150.00535047162663271
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2796.859860202840381.36045227233311e-06
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L88.681238713525398.90404289517874e-10
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_126.256857791146456.14076017050026e-06
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS1055.528184295084560.0019089083916743