Chr:
Chr10
Start:
15414192
End:
15423559
Strand:
+
Ref_name:
OSA-LNCN1197
Sequence
(OSA-LNCN1197.1):
CUUGGGUCUUGGUUGGUCAGCAGCAGUCAACACUCCCCUGGAGUGUCUACUGUCUACUGCAGAAUUGCAGAUUCGCUGCACUCUCUUGCCAAGCUGCCUCGCGCAACCUGCCGCUCUGCAGGAUUGGCGCCAAAUCAUCGAUCUGCGCGCCCCGCGCGAACGCCAGAUGGCGACGAACGCCCUCUCCUUCCUCCUGCGGCUUCUUGCUGGCGCGGCCUCGGGGGGCUGCGGCUGCGGCUGCGGCUGCCGGCACACGGAUCAGGACGUCGAGGCCGCAAUACACAAUUGAGAGCUUUGUUCGCUGCAUCCACUGGUACAAUCAACCAACAACGUCCCAAGAGACAAGAAAAACCAUCACUAGAUGAUAAAAAAACUAAGGCCAUGAUGCUGGCAUAGGGGCAAUUGGAGUUAUGCAAUAAUGAGAUGUGACAUAUUCUAGCUUUAUAAUUGAUUUUUCAAUGUAUGCUGCAUGACACAAAUGUUCAUUUCAUAGAACCAUGUUUUCUCAUAUCUUUUGUCUUCAUGUUAUAAUCUACCAUUACUUCUAUUUAGUUGUGCAUUUGUGCAAAAGAAAAAACUUUGUGAUGAUGUUCUAUCUCUUUUCUCUUAUUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.5%
ME_num:
MEP:
18.7%
HE_num:
HEP:
49.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
28.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.79437070497665 | 4.50683615736708e-13 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.13363530662715 | 0.0487058559836533 |
3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.46582116277654 | 3.14575154144842e-15 |
4 | 9311 // leaf // control--/--9311 // leaf // salt | -1.62414182296857 | 2.66743904214199e-06 |