Chr:
Chr10
Start:
14110434
End:
14114684
Strand:
-
Ref_name:
OSA-LNCN1166
Sequence
(OSA-LNCN1166.1):
CCCAAAUUUUUUUGUUAAAAUUGAACAGGAAAACUAGCUGGUCCAAGCAUCCAAGUAGGAGGCUGCUGUCUGACGUGAGAUCGGUGGUGAGCUCUAGUUCCUGUCUUCCUGAUGCCUUCCAGUCGCAGUAGUGCAGCUGGCAGCAGUAGCACUCAACAACAACAAAACUAAAGAUUUCGUGAGGCAAGUCGUAGCUGGAACAAAUAGUUGUAUGUUUAUGUGGGGGCAAAUUGAGUUUUAUCAUUUAUUAUUUUGCAUGUCUGGCACUAAUGUACAUAGAUGGUUAGCAGAGAACAUAUAUAAGGCACUAAUUGGGUGAAGCUAUCACUAGGAGUAGGAGAUUGGCUCAUUUUGGAGGCUACUCAAUUGGGCUGUUUUUUUUCACUUUUUAUUCACCUCAUUUCAAUAUACUUAUCUGGUCGGCUAGGAACGAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.05%
ME_num:
MEP:
20.93%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
1.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.23384286602599 | 0.0381176128861075 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.63529650612468 | 0.013043024741776 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.44405343590162 | 0.0306236627744359 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.01728457060357 | 0.00332819710113616 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.94972598365397 | 0.0258649465470714 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.76699171683964 | 0.0131456700831403 |