Chr:
Chr10
Start:
13930601
End:
13932728
Strand:
-
Ref_name:
OSA-LNCN1157
Sequence
(OSA-LNCN1157.1):
AUCACUUUUGAAUGCAGUUCAUCUAGAACAAACACAGACUGAACAAGUUCGAAAAAAUUGUACCAAUAUUUGACUGAACAAUUCUGAUCAGACUAUGAAGGACUGGUUUGAUCCAACAAUGAGAUGGGCCUAAACCUUGAGAAGCAGUACCAAACACGGCAACAUCAUAUUAAAAAGUUGCACUUGCAUCUAUAUUUCUUCCACUCUACUGGGUAAAUUUAUUACUUAUCCAUCAGUUUCAGAUUCAAAGCUCAGGACUUCCAACUGCACACUCAAUUAAAUCUGAAAAAGGCCUGAUGACAUAAUUCAUGUGGUUUAUGUGACUGCACAAUUAGGUGCCAUCAUUUCUUAGGACACAUCUUUUCCCCCCGGAAAAAGAUGACAACCGCUCGCUAAUGAGCUAAUCUCUUGGACCUCGAUGAAAAGCAAGCUGUCAGAGAACAAGGACCUGAUGUUCAUGCUUCACCAAACGUCAAGUCCUACUUCAACUUUUGCAAGUCAUAACUGAUCAGAUCAUGACAUGCAUUCACAACUUCACAUUUUUCUGAGAACCCAUUCACAAUUUUACAUGCAAAAUUCCAAAAAGAACAUGACUCACGACUCAUGACUGAUCAGAUUCAGACCCCAUGACAUGCAUUCACAAUUUCACAUGUCAAAUGCAUGAAAUCAAUCAAGAAGAAGAACCUAACAUUCUUUUUCUUCUCCUCUCUCUUCUUUUCCCUUUCAAUCUUGCAGGAACUGAGAAGGAAGCUACAGGAGCCUAAACCUAGCUAGGGCAUGUCAUGGCUCAAAAACCACCUAACACCUUGACUGUGGAACAUGACCUUGUAUGCGAAGCCUCCAAAGAUAACUUGCCUACUGUGAUAAGCUUGGCAACGAUAACUUGUGAUCCAUGUCCUUCUCGAGGUUUACCCUGGAAAAAAAGGGGAUGGCAUGGCUGAUGGUGUUGGCGUGUUGAUCCCAGCCAUAUCCGCAAUCUACUCUGGUGUGUUUACGAAAAAAAAAGCAAUCUACUCUGUGUGGGUGAAAGGAUAUGGAAGGCAACGUCUCGGCAACGACCAAAACGUCGCCGUUGAAAUUUGGGAAGCCCCUCGGUUCAAAACAUUCUGAUUGCGACCAGCCAGCAGCAGGGGUUCACGAUUUCGGAAUAGGAGAGAUAUUUGGCGGGAGCAGGGGGUGACAUUUCGGUGGUUUGACACAAAAGUUUUGGAUUUUGAACAAAAGAUCGUUGAAUUUAAACAAAUUUGUUGCUUAGUUAAGACCAAUUCAAAAAUUUUAGCUAAAGGCACAAGCUGUCAGAGUACCCAGUAGACCUGAAAUUUCGGUUUGAAAUUAUGAACCUUAGCUAAAUGGGUUUAAGACUUAUUCUAGUUGGCAGCCACAAGAUUGCCACGUAAAACUUUUGAUGUGAUACAAUUUGUUAGCCUAGCGGUUAAUUGAUAUAAAUAUGACACCUCACUGGGACUUGGAUUCACGUGUUACACGCAAAUAUUUUUGUCAAAUCAUCCCAUACAUCUGACAAAGCGAUGUGUGGGUGUGAUAAACGUAGUAGUCAAUCAAAUAAACCCUUAAUUCUGCUUAGGGCGCUUUUUGGAACAAAGAGUUCUUGGGGGAAUUUCGAAGGAAUUCAAUUCUAUAGAAAUUUUUUCUAUGCGGUAUUUUGAAU
Sequence
(OSA-LNCN1157.2):
AUCACUUUUGAAUGCAGUUCAUCUAGAACAAACACAGACUGAACAAGUUCGAAAAAAUUGUACCAAUAUUUGACUGAACAAUUCUGAUCAGACUAUGAAGGACUGGUUUGAUCCAACAAUGAGGUACACAAGAUCCCUUGUUUUCCCUUUGAAUUUGGGCAUUUCUAGAGGAAUUCUAUAUGAUUUGUACCAUUAUUUGCAAGAUUCAUAUGAAAUUUUUGCAUCUCCAGAUGGGCCUAAACCUUGAGAAGCAGUACCAAACACGGCAACAUCAUAUUAAAAAGUUGCACUUGCAUCUAUAUUUCUUCCACUCUACUGGGUGCCAUCAUUUCUUAGGACACAUCUUUUCCCCCCGGAAAAAGAUGACAACCGCUCGCUAAUGAGCUAAUCUCUUGGACCUCGAUGAAAAGCAAGCUGUCAGAGAACAAGGACCUGAUGUUCAUGCUUCACCAAACGAACUGAGAAGGAAGCUACAGGAGCCUAAACCUAGCUAGGGCAUGUCAUGGCUCAAAAACCACCUAACACCUUGACUGUGGAACAUGACCUUGUAUGCGAAGCCUCCAAAGAUAACUUGCCUACUGUGAUAAGCUUGGCAACGAUAACUUGUGCCUGGUCUCGGUGCUAGUGAUGCUGCAAGUUUUUUUUUUUCACCCUAUGUGUGUGUUUUGCCGGUUUUCAUUUAAUUAACUAUGCUGGUGUCAACUCAUUUUUCUUAUAAUAUCAAACAGGAUCCAUGUCCUUCUCGAGGUUUACCCUGGAAAAAAAGGGGAUGGCAUGGCUGAUGGUGUUGGCGUGUUGAUCCCAGCCAUAUCCGCAAUCUACUCUGUGUGGGUGAAAGGAUAUGGAAGGCAACGUCUCGGCAACGACCAAAACGUCGCCGUUGAAAUUUGGGAAGCCCCUCGGUUCAAAACAUUCUGAUUGCGACCAGCCAGCAGCAGGGGUUCACGAUUUCGGAAUAGGAGAGAUAUUUGGCGGGAGCAGGGGGUGACAUUUCGGUGGUUUGACACAAAAGUUUUGGAUUUUGAACAAAAGAUCGUUGAAUUUAAACAAAUUUGUUGCUUAGUUAAGACCAAUUCAAAAAUUUUAGCUAAAGGCACAAGCUGUCAGAGUACCCAGUAGACCUG
Sequence
(OSA-LNCN1157.3):
AUGGGCCUAAACCUUGAGAAGCAGUACCAAACACGGCAACAUCAUAUUAAAAAGUUGCACUUGCAUCUAUAUUUCUUCCACUCUACUGGGAACUGAGAAGGAAGCUACAGGAGCCUAAACCUAGCUAGGGCAUGUCAUGGCUCAAAAACCACCUAACACCUUGACUGUGGAACAUGACCUUGAUCCAUGUCCUUCUCGAGGUUUACCCUGGAAAAAAAGGGGAUGGCAUGGCUGAUGGUGUUGGCGUGUUGAUCCCAGCCAUAUCCGCAAUCUACUCUGGUGUGUUUACGAAAAAAAAAGCAAUCUACUCUGGUAUCGAUCUCCAUCCCCAUCUGGUGUGGAUAUGAUAUGGAGUUGAAAUGGGAGAUCCAAUUAAUCCAGAGCUUGAGGGUAUUAUUAAGCUCUUUGAUAUGCAGUGUGGGUGAAAGGAUAUGGAAGGCAACGUCUCGGCAACGACCAAAACGUCGCCGUUGAAAUUUGGGAAGCCCCUCGGUUCAAAACAUUCUGAUUGCGACCAGCCAGCAGCAGGGGUUCACGAUUUCGGAAUAGGAGAGAUAUUUGGCGGGAGCAGGGGGUGACAUUUCGGUGGUUUGACACAAAAGUUUUGGAUUUUGAACAAAAGAUCGUUGAAUUUAAACAAAUUUGUUGCUUAGUUAAGACCAAUUCAAAAAUUUUAGCUAAAG
Sequence
(OSA-LNCN1157.4):
CAAAUUUUUACUGAUACAUGUUGCUUCCUGUCUACAGAUCACUUUUGAAUGCAGUUCAUCUAGAACAAACACAGACUGAACAAGUUCGAAAAAAUUGUACCAAUAUUUGACUGAACAAUUCUGAUCAGACUAUGAAGGACUGGUUUGAUCCAACAAUGAGAUGGGCCUAAACCUUGAGAAGCAGUACCAAACACGGCAACAUCAUAUUAAAAAGUUGCACUUGCAUCUAUAUUUCUUCCACUCUACUGGGUAAAUUUAUUACUUAUCCAUCAGUUUCAGAUUCAAAGCUCAGGACUUCCAACUGCACACUCAAUUAAAUCUGAAAAAGGCCUGAUGACAUAAUUCAUGUGGUUUAUGUGACUGCACAAUUAGGUGCCAUCAUUUCUUAGGACACAUCUUUUCCCCCCGGAAAAAGAUGACAACCGCUCGCUAAUGAGCUAAUCUCUUGGACCUCGAUGAAAAGCAAGCUGUCAGAGAACAAGGACCUGAUGUUCAUGCUUCACCAAACGUCAAGUCCUACUUCAACUUUUGCAAGUCAUAACUGAUCAGAUCAUGACAUGCAUUCACAACUUCACAUUUUUCUGAGAACCCAUUCACAAUUUUACAUGCAAAAUUCCAAAAAGAACAUGACUCACGACUCAUGACUGAUCAGAUUCAGACCCCAUGACAUGCAUUCACAAUUUCACAUGUCAAAUGCAUGAAAUCAAUCAAGAAGAAGAACCUAACAUUCUUUUUCUUCUCCUCUCUCUUCUUUUCCCUUUCAAUCUUGCAGGAACUGAGAAGGAAGCUACAGGAGCCUAAACCUAGCUAGGGCAUGUCAUGGCUCAAAAACCACCUAACACCUUGACUGUGGAACAUGACCUUGUAUGCGAAGCCUCCAAAGAUAACUUGCCUACUGUGAUAAGCUUGGCAACGAUAACUUGUGCCUGGUCUCGGUGCUAGUGAUGCUGCAAGUUUUUUUUUUUCACCCUAUGAUCCAUGUCCUUCUCGAGGUUUACCCUGGAAAAAAAGGGGAUGGCAUGGCUGAUGGUGUUGGCGUGUUGAUCCCAGCCAUAUCCGCAAUCUACUCUGGUGUGUUUACGAAAAAAAAAGCAAUCUACUCUGGUAUCGAUCUCCAUCCCCAUCUGGUGUGGAUAUGAUAUGGAGUUGAAAUGGGAGAUCCAAUUAAUCCAGAGCUUGAGGGUAUUAUUAAGCUCUUUGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.18%
ME_num:
MEP:
71.95%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.74
Avg Expression:
9.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.58395887700085 | 7.78662704880395e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.44522699903048 | 1.56172098479507e-13 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.47998943748184 | 0.0135025881107945 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.37284328474719 | 0.0299221841660932 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.14213468909084 | 6.15454768182378e-11 |