Chr:
Chr10
Start:
13383390
End:
13385603
Strand:
-
Ref_name:
OSA-LNCN1149
Sequence
(OSA-LNCN1149.1):
AUCGUAUCCCUUCCGGGUUUAGGCUGGUGGUUGGACGCAUCUCAUCAUCUACUUCGCCGACCUCGACCUCUCAACAAUGGCGAUCCGGGACCGGGGAGACAGUUGGUGAACACCAACCCCUGCCGUUACCAAGCUACUAUGCAGGGGUGCCGUCGUUGGUUCCAAUGCGCUGCCGGCUAUGAACACAGCCGGCAAAACAGUUUCACCUCAUCCUUCUGGGUUUUGGCACACACGAAAUGCAAAGCUUGUAAGGCAGGAACGGCCCAUCAGAACAAGCACUUGGGCUACGGGCUUAUGGCCCACUUUGCGAUGAACCUGUUGGCCUGUAAGCUGGGCCCACUCGUCCACAGAUAAGCGCAGCAGCAAAGCCACCCGGACAGGUUGGCGACGCGACGGCGACGGCGGCGGCGGCCAUCGCUGGCGCUGGCCGCCGAUCCGAUGCGAUCCGGCACGGAACUCGGCGAGCACCCGCUGCUUUUGGUUGGAUCGAUGGAUGGAUGGAUCGGCGACGAGGAAAGGCGAGCGCCCACCCCGCGCGCGGGAGUUCCCAAAUAUUCCCCCUCCUCCUCCUUUCUUCUUUUGAUCCGCCGUGAUCGGCUAUCUCGGGAUCGCCGCCGGCGCUGCCGCCGUCGCGCUUUUCCUUCCCCCCAAUCGAUCGAUCGAUCGAUCAGGCGUGUGGAUUCUCCAAGAAAGAGAGAGAGAGGGAGGGAGCGAAAGAAAGGCGAAAACGCGAGGCCGAGUCUUUGUUGGCUUUCGUCUUUUGUCACAUUCUCCCCUAACCUUUCGCUUUCCGGUCUUUCGAGAUGAAAACAAAUUUGAAAUUACUACAUCCGUCCCAAAAUAAGUAACGUCCGUCUUAUUAAAAAAUUUUAUGAAAAAUUUUAAAAAAAGUUAGUCACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.69%
ME_num:
MEP:
18.29%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
1.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.61331393731126 | 0.024667661513577 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.11369138106797 | 0.00788519294241394 |