Chr:
Chr10
Start:
12897783
End:
12898393
Strand:
-
Ref_name:
OSA-LNCN1141
Sequence
(OSA-LNCN1141.1):
CGGUUGGUAAAGUUAGGAUUUUUAGUCCCGGUUGUUAAACAACCGGUAAAACAAAACCUCUAUCCAGUACACGCGCAUGCAAAGUCUCCUAUUAAUUUCAUCCUAAUCUCCUCCUCUCCCAUCCAGCCAUCUCCAUCUUAUCUUCUUCUCUCCUCCUCUCCUCCCAUCCUUCUCUUCCUUCUUCUCUCACCCCAUCUCCUCCUCCCCUCUCCUCCCCCUCCUCCCCUCCCUUCCCCUCCGGCGGGGCGGCAGGAUGGAGGCCGCCGCCGGCGGCCCGACGCGGGGCGGCGAGAUGGAGGCGGCGGCGGGCUGGCGGCGGGCUGCGUCGGGGGCGGCGGCGGCCAGCUGCGCCGGUCGGGAGGCAGCGGCAGGAGAACUUUUUUUUUUCUCUUCUCUUUGCUAUCUGAUGAAUGAUGUCGUAGAUGUGAACUUUCUUUUUCCUUUCUUUGUUCUCUGUGAUGAAUGCCCUCUGUGAUGAGAUGUUGUAGUUCUGAACAAGUGUAAACAAUAUGGAUGCUUUGUUGUUUGAUUUUAUUCAUUCGAUCUAUGGUUUAGGCUUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.36%
ME_num:
MEP:
24.19%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.88
Avg Expression:
4.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.2298941086279 | 1.51449881698567e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.93097488132729 | 0.000118439882197453 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.63721499658375 | 3.82853271014123e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.7893056276118 | 0.00011821964730899 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.96973295093748 | 0.0150388143461723 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.17630008755949 | 4.06526721739637e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.58158222828003 | 0.00466535779787132 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.41259223850626 | 0.0346573528324708 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.73168921890267 | 0.00512747763472011 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.11032377208157 | 0.021123695594849 |