RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1118

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

11776682

End:

11779314

Strand:

.

Ref_name:

OSA-LNCN1118

Sequence
(OSA-LNCN1118.1):

UUUUAAAUCUAGAUUGAAAGUUUUCAAAAAUUGACUUCACGUGUAGAUCUGUUUUCAAUUUGUUACUUAAAAAAAUUAGGAUAUGGCAAAUUACCGAGAAAUCAAAACUAGUUAUGGUGCUAAAUUACGGCGUUAAUCGUGGGCUAUCGCGCGAGGGUUGGGCCGCGUGCGCGUUGCCGGUGCGCACACGCCAACUAGGAAUCCGCGAGCAGCGAUGGGAACGGUCGAUUUGUUCCCGUGGGGAAUUUACUGUCGAGUCUAAAGUUUGUCCGUAAACCGAAAUAUCAGGGAUAAUCCAUCCCUCAACUUACAAUACCGUGCUACUCAAGGUAUCAAACAGUAUUAUGCCAAGUUUUAGACAACUUUUAGUUGACAUGACGAGCUGAGUCAAUAUGGGACCCACACAUGCCCCACAUGUUAGUGACCAAAUUUUUACUUCCUUCUCUCUCCACCUCUUUUCCACUCUUCCUAUCUCCUUCAAGGCAGCUCGCAGCGAGCGGCGUCAAGAGGCGUGGUGGGAGGGCGGAGAGGGGCAGCGGCCGCCGGUGAGAGGCUGUGACGUGGUGAUGGCAGUCAGACUGGAGUCACGCGGCCAGCUUGGGGCGAUGGAGGGGGGGUCCACAGCGACCUACUCUCGUGCCAGUCCCCGCCUCUAUUGCCUCUAGAUCUAACACUGCAAUUUCGAUAUCGCGCUCCUUCGUCGUCGACGUUUGUGCCCUAGAGAGAGGUUCUGACAGCCGGCGGCACCCUUGUUGACCUACUCCAACCACUGAUGACACCCUCAUUGACCUACUCUGACCACCGACAACACCCAUGUCAAUGUACUCUAGCACCGAUGGCACCCUUGUUGAUGUACUCCAACCAUCGGCAGCCCCAUUCACUGCUCCACCCCAUUGCCUACCCUAUCGCCCAAGCUGGCUGAGCAACUCCUCUCCGACGGCCAUCACCAUACUAUGGAGGUAGUGCUGCCUCCCGGCAGCGGCCAACGCCUUCUCCGUGCCUUUCCAUGUGUGAGGUCUGAGAGAAGAAGGAGAGGAAGAUAGGAGGGAGAAGAGUUGGCCGCCGACAUGUGGGACCCACAUGGGUCCCACUCGCAACGUUAGCCAAACCCGGCCACUAUACUAGCAAGGGACCAAAGUUGACACGGUAUCAUGAGUUAGGGGAUGGGCUAUAUAUACUUGGUGUUUCGGUUUAGGGACGAAUUUCAAAAAUGUUAAAUUAAGGGACCUAUAUAAACUGAACUUACUCCUUAGCUUAGAUCCAAUGGGUGCAUGUAUGGGAGAAGAGAAGUCCUGCAAAAAAAUGCACAAGAGCUUUACACUAUUACAAAAACACCCAUAGGUGUCGGCCACAAAGGUGCUAGUUAGCUAAAAACCGGCACCUAUAACGGUUAAUUGGUGUCGGUUUUAGUUGGGAUGGUCAUUGGUGCUGGUUUUUCAUAAAAACCGGCACUAAAAAUACUCCCGCCAACGGUCCGAAAAUAGCAUAGGUGGCAGCCGUGCACAAAAAACCGGCACCUAUAUGAAAGGUAGCGGUUAUUUAACCGAACCGACACCUACAGUGCUAUAUAGGUGUCGGUUCUUGGUAUAGAACCGGCACCUAUAAUAUUAUAGGUGCCGGUUAUAACAAUAUAGGUGUCUGUUCUGGGUGCACAACCGGCAUCUAUAGUACCAUAUAGGUGUCGGUUCUUGGUGUAUAUUAUAGGUGCCGGUUAUAAAACCGGCACCAAUGACUUUGAUAAUAGGUGCCGACCAAAGGGUGUCGGGCUUGAAACCGGCACCUAUAGGGCCUUAAAAACCGGCAAUUUUAAUACAGAAACAUCCUUAUAAAUAAAACGUUGAAUCCACUGAUAUGAAUUCAAAUAGAAAUUGAAUAUAUAUUUCUUUGGUGUAUAAACUUUCCAUAUAUAAAAAAAAGAAUCUGAAUAUCCGAAUCGACAUGUCUUUUAAUUUUCAUGAAUAUUGCAUAAAACAGACUAAUCAUCCAGAACAUCAUCCAUUCCAAAUACAUAACCAAAUGGCAACCACCUACGCUGGAUCUACAGAAUCACGUACGAGGACAACUUCGUCGUGUUUUCAUCGGCGAGAAGGAAAACUAUAGCUCACGAAAUUUGAAACUACAACAUGGCCAAUGACAAGGUGUUUUAAACUGCUGCAAGCUCAUGACAUUCGUUAUCUCCAUGGUAGAAUAAUACAAAAAAAUAAUCUUACUCUAAAAAGUAUGAAGUUUGAUAACUCAUGGUAUCUUGAGAUAUUAUUUUUUAUCCUCAUGGCUCCAUGAGGAUAAAAAAGAAUAUCUCAAGAUAAACAACACAUCUCCAUGAGGAUAAAAAAGAAUCUCUCAAGAUAAACAACACACAAAAAACACACCACAACAUGAAAUUAAUAAGUUACAUACUUACAUCACAAUCUAGGGAAGUGCUACACUUUGAACUAGUUAGCUUCUACUUAGUUGAAUCAUUUAUUUUUCCACAGCUCAUCAACCAAUAGCUCAAAUGAUGAAAGCCAAUCCUUCUUCUCAUCGUCUUCAUAUGGACCAUACCAAAGGUCCUUGCAACCCGAAAUGUAGUCUUGAGUGUUAGGGUGCAGGAGGCCACUGUUGAAGAUACUCUCAUUGGCCAUGUUGUAGUUGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

465

LEP:

94.51%

ME_num:

25

MEP:

5.08%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.96

Avg Expression:

1.28

Tip: OSA-LNCN1118 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-9.439614215147282.36322546425275e-14
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-8.57767730252843.99186674494849e-12
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-9.68900354846832.84082498114553e-15
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-7.728784126123878.73258834690256e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-8.937929336955515.25120537917742e-13
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-7.247861348527682.16043590900155e-11
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-2.468351561291872.77899992843447e-17
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-8.836722991547817.26599377547569e-13
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.613894516962893.39317222171315e-16
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-9.501964758563487.96261400725892e-15
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-8.121477798652952.945760508789e-14
12Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-8.43364542639671.06784901982198e-11
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-10.11568468503811.08528378542453e-16