Chr:
Chr10
Start:
11651679
End:
11653894
Strand:
+
Ref_name:
OSA-LNCN1117
Sequence
(OSA-LNCN1117.1):
GGGAUGGAAGGAAAGAAGAUUACAAGGAAAUGUAAUCAGUUUAAUGGGUCCCACAUCAGUAGAAAUAUAACUUUUAUGGGACAAAGGUUCAAAGGUAAAAUUUCAAUUUUUAUGGGACGGAGGUAGUACUAAAUUUUAUACUACAGAAUGUGUCAAUGUGGUACCUCUCGGUAGCACCUUGAGGCUAAAAAGGUUCUACUUUACACGAGUACUUCCCCAACGACAAUAUCAAAAAAAGAUAUAUGGCAUACAUGUUCAACUCAAGUUGGAGCAUGGAAAAGAAAUGUUAGAAUAGGUAUCAAAUAUACCAGUCCUAUUGGAGUUGAAAUAGGUGGUAGGGGGUAGAGUUAGAGUCGGACUCUGUAACCCAGCAACUCUCUUAAAUAGGGGGAGGCACCACAAUGUAAUCAUGGCGACUACAAUGUAGCGUAGACACGCAGGGAGAUGAUCACGGCGUGGCCAUGGACUCGUAGCGGUUAGGAGCUAUAUUGGUUAGGGAGGAGCGCCUAUAAUCAGAGCCCGGGGAUGUAGGCUUCGGCUGAACCUCGUUAACAAAUACCAUGUGUUCCUGUGUCGUCAUCUGGCAUGUCUUGGGCGAUCAAUGACUGAAGCGAUCGGGAAGGUUAGUCGUCGUUCCGCUAUAUCGACUAACUUUUUUUAACAAGAAAUGCUUUAACUCAAUUGCUGGUUUCAUUUCUUCUGUGAAAACUAACUUGCCUAAAUUGUGCAAAUACAAGUGAUUUCAGGCAAUGUUUGAUGCUCUAUUCGGAGUGCAAGAGUUUGCAAUAAUUUUGUCAAGCUAACAGGCAAUGAGUCAAAAUCGAUCAUAUCGUUUCCUAUGGAAAACAUAUGCUGCAGAUCAAUUUGCCCUUUAAAACGAGUUAUGGCAACAUGAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.59%
ME_num:
MEP:
37.8%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
1.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.25527722147324 | 0.00224254632470356 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.32135466249867 | 0.0166007718966893 |