Chr:
Chr10
Start:
11383035
End:
11388626
Strand:
+
Ref_name:
OSA-LNCN1112
Sequence
(OSA-LNCN1112.1):
AUUUUCGCUCUAGAUAGUUCUAUCAGGUGCUCUCAUACUUUUACUUGGAGUAAAGUGCAUUGGCGGUCCCAAAUCGACACAUCCCCUCUAGGAUCCUAUGUGGCGCUGAUGUGGCAUGCCACAUGGACGUGACGUGUCCUUUUCUUUUUUUUUUAUUCUUUUAUUUUUCUUUUUCUUUUCCAUUUUCUUCUCAUUCUUCUUUUUUUCCUUUCUUAUGCUAGAGAAAGGAGAAUAAAGGGGAAAAAGAGAAGAAAAAAAGAAAAAGGAAAAAAAUUAAAUGGGUCCCAUUUGUCAGUCAAAAUAAUACCACGUCAUGUCCAUGUGGCAUGCCACAUCAAUGCCACAUAGGAUCCUGAAGGGGUUGUGGCGAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
40.24%
HE_num:
HEP:
56.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.64
Avg Expression:
19.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.68280291938208 | 1.52359596888821e-16 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.84359256458078 | 6.19285782611364e-05 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.7199863911271 | 0.0100080924907043 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.37530139329811 | 0.00785766251637267 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.03964398455014 | 0.00203672828205086 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.08143747721156 | 4.18081496736923e-07 |