Chr:
Chr10
Start:
9330628
End:
9339749
Strand:
+
Ref_name:
OSA-LNCN1080
Sequence
(OSA-LNCN1080.1):
CGCCGCGUGGAUCGCUCGCCCACGAGGCCACGAUUUCCUCCCGUCUUCCCCAACCAGCAGUCGCCUCUAAACCCCGCCUCCGUCUCAGUCCACGUAUCGCAUGUGUUGCUGACCUCCUAUCUCCCGUCGGCGGCGCCGGCAAUGUCUUCUCCGCCGCAUCUCGCCAACCCUACCGCAACGACCUUGCUCGCUGAAGAAGACAUGACAACAUCCCUCUAAACCAGCCUACUGCAAUGGAUUACAUCGUUGCAACCUUCCCAACAAGCAUGUACUCAUGAAUGUAUCCAGGUGGUCACUGAUGUCCUCUCUUGUUAAUUCCCUGAAGUCCCUACUCCCUACUCCCUAUAUUCAUAGAGCUUUAUAGGAAAACUAAGGUGUCUGAAAAUAACUGUCUCAUUUGUUAGUACAUUGAAGAAACAUAGUUACAAAAGCUAUAUGUAUGAAUUUACUGAGGCGGAUGGAUACCUUUGUUAAAUGUAUUUCUACGGAAUGUCCUGAUUUAUGAAUCUAUGUAGUGUGGACCUCUCCUCUAUAAGCUUUGUCACUAUACAUGACAUUUCAAAAGUACUCAAGAAACCCAGUUUUAUAGAUAUACAUGUUCCAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
25.2%
HE_num:
HEP:
72.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.87
Avg Expression:
119.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.1657867750402 | 0.0366721412008119 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -3.65596831638742 | 0.00222590576152157 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.04338638525883 | 0.0190281604714228 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.50858277705905 | 0.000493249394895555 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -5.64669612633621 | 3.24245523221276e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.00252199639197 | 3.1722545279495e-07 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.12327129035066 | 0.0301451631422192 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.7877724066399 | 0.0351979595422966 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.09163729211774 | 0.0341813598279869 |