RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1076

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

8881736

End:

8884087

Strand:

+

Ref_name:

OSA-LNCN1076

Sequence
(OSA-LNCN1076.1):

UUUUUUUUCUUUCUUUCUUUUUAUUUUUUUACUAAAAACAUACUCAAGGACCUCAAUGUAAGGUUACAGGGACUCAGAUGUAAAUAUAAAAAUUACAGGGACACAAAUGUAAAAGUGCAAACUCAAAAUUAAAAUUAUACAAAAAUGGAAUGUACUCGUCCCGAAGGUUCCGUUUUUGCAAACGGAUCUCCAAUUCGACACUUCAAAAAUUUUCACCAAGCUAUAUGGGAAGACACGGUAUGGAUCUAAACCGAGAGAAGAGGGAGGGAAUCAGACUCCUCACGGUGGUAGUGGGCGACGGGUGGAUGGAUACGGCACUACUAGGAGUCCGGAUUUGGUGAGAGAAAAAGGGAAACUGAUCUACAAUCAAUCUGAUCUACUAUUUCUUUUCAGAUUAAACUCUCAAACUUCCAAAAACAAAUUUGGAAAUUCUUCUCCCUCCUCUCAGCGCCGGCAACAAGCACGACCGAUCUAUUCACGGGCAAACCAAAAACUCAAGCAAAAGCUAGAUGCAACUCCAAAACUGACCGAUAAAAACUUCUGAAAACUACAAAAUUAGAACCGUGGCAGUGAGCCGAUUCCGUUUUUGUAGAUCCCGACAACAACUAACACACGGCGGCGGCGACGACAGUGGCACAAAACGUGACCAGAACUCGAAACUCUACACGAACUAGACACUAAGACCAGCAACACGACUAGACGAUGCAACACAAACUCAACAAAGCAAAAGCUGAAAAGAACAAUGCAAUGGCACAAUAUGGCUAGGGAAAUGAUACAAUUUUUUUUUGUAUGGCAAUUUUUUCUGGUUAUAGGUAGAUAAAAACUCACCGAGCAACGAAAGCUCUGAUACCACCUGAUGAACCCUGAGUUCCACUCGGCACUCAAGGCUGUUGUUGGCCCGAUCUUUCGGUGAGUUGAUGAUAACUACGAUUUGGGAGAAACGUUGACGACCCGACUACAACCGUACAAGACGUUGUGUUGCGCCUUUGCGAUCGAUACACCUCUCCGUGGGUUGUUGAUCUUGCUGGUGCAGAUCAACCUUAUUCCUGCAAGCAAAUCGAAGAAACAAGCAAGAACAAGAUAAAAGCAAUCUGAAUAGCAAAUAGGAAUGAAUACACACGAUAAGUUGGGGUUUCAAAUACAAGCAGACGGGCGGUCUAGCCGACACGCGCGCUGCAAGGAAGUAGCAAUGGCUAAACUUUCAUCUAAACAAAACCCAAGAAACCCUGAAGGGGUACCUAGCUAUUUUAGGAUGUGGGAGAACGACCAAGAGGGUCCUAGGGUCGUGCUCCACCAGCUUGGGGCGCACCCCACAUGGGCCCCACUUGGGGCCGGGGUCCCAAACGAAGUUACAAGCACAAAGGCCCAUGACAGGUGACGCAGCACCUUGUUGCUUCAAUUGCGGCUCAAUAAGAUGGAAUUUCAGAAUGAGGCUGGAUCCGUUGGAAAGAGGGCACCGAGAGCUUUCCAUCAAGUACUCACGGGCCGAAAACGGAGCUCGUAUGGAGAUUUGGCGGCCAUUUGAACUCAGCAGUGCAGCAGGUGGCCGAAUCGGAUUCCAGCACUUGGAGGCCUUGACCUUGAUGUCUUCUUGUUCAUCCAUCAUGGAGGUGAUAAAUGCUGACCAAUUGAAAAAAUGUCGCUGUAUUCUGCAUUUGGGCUCACAGCUUCAUGGAACUUUUUUUUUCAGUACAUAGAACAUACUGUCGCAGCAACCUAAUGAUACUGUUAGCAAUAAUCCAAUUUAGCAAUAUAAUGGUGCUGUUAGUAAUCAUCUAUUCAAAGUGUAAUGAAAGAAAUGACCAUUUGCAUAAACACUAGCAAACAGUUUCAUGACCAUGACUAUUUGUAACUUGUAUUUUAUAAACAAACUCUCUUCCGUAGCAUCAGCGUGAGACGCUUGUUUCAUCAGUAUUGUUGCUUUAUGCCAUUUUUCUUAGAGCUUUAUCCCUAUCAGUACUAUAGUACUAUCUAAUGCUUCUGUAAAUCAUCCAAUCGUAAACUGGACCAGCAAAGCAAAUGAUCUGUUUUUACCACCGCUAACAAACAAUGCCUAUAAACAAUCCUCGGCGAUAUAUAUUUCUCUUUAUUGUUACUGUAAAGUAUUUGAUUCAUUUUGUCACACCCUUUGAUUUGAUUUUCCGACCGAAUCUAUUUAUAAUUUACUGUACAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

364

LEP:

73.98%

ME_num:

123

MEP:

25.0%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.95

Avg Expression:

7.28

Tip: OSA-LNCN1076 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.708427030891760.00644448583554426
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.326410076213150.0368765876068896
39L136 // leaf // control--/--9L136 // leaf // salt-1.054135649165490.0204652124360971