Chr:
Chr10
Start:
8553817
End:
8555226
Strand:
+
Ref_name:
OSA-LNCN1066
Sequence
(OSA-LNCN1066.1):
AUGAAGCCCGGCAGGAAGUCUGCUACAGUGUCGCCCCUAACCUCCAGCCGGUCGAUCUCCUCCCUGCCGUGCCCGUUUACCGACGUUCCGGAGGAGAGUAUUUUCGUUGAGGAAGGUUCGGAAGUGUUUGCGGAAGCUCAAGGCAAGUCACACAGAUCCCAAACAACCCUUUGAGCAUGUUGAACCCGUUUAAAGCUAUUGUUUGAUUUCAACUUAUGCAUUAUUUUCGAAUGUCAUCGGGUGGUGAGCCUUUCCCAAUUAAUUAAUGGCCGAAGAUGACUUUAUUUUCCUAUUAGCUAGAACCUUAUAUAUUAGUUUGGGUUCAGCUAAAUGCUAUAUAUAUAUAAUUGCUUAGCCAUGCUUAGAAACAUUAGCACAUGAUUGGGAUAACUAAUGUUACACUAUCACUUAUGGUUAUAUUUAAUGGUAGCUCAGGAUGGUCAAUCGUGAUUGGUUAAUUAAUUAUUGCCAAUUAAAAUUUGUCAAUGGUGGGUUGUGAGCACAUGGUUGUGAAGGUCGUGCUCAUUACAAUUAAGGACUGGUUCGCGAACUACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.26%
ME_num:
MEP:
56.1%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.64
Avg Expression:
2.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.949048799341 | 0.0315204311500154 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.61612109484087 | 0.0295011688102928 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.16934298165607 | 0.0448609912236015 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.6410443298162 | 0.011287182157985 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.08790640783305 | 0.0148868061549787 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.31789259693083 | 0.0336267141840962 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.19464110708262 | 0.000183837073138611 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.13382543469063 | 0.0142392036203787 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.23022963749524 | 0.0300992407584016 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.56674297539607 | 1.28883991771628e-15 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.53345252297506 | 0.021898325060566 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.38058028865143 | 0.0140145885073782 |