Chr:
Chr10
Start:
7432035
End:
7434762
Strand:
-
Ref_name:
OSA-LNCN1042
Sequence
(OSA-LNCN1042.1):
UAUGUCUGGGAGUAUCCCAUAUAAUUCCCAUGAAACUAUAAAAUUACCAUAAUCAUUAUCAUAACUUUAGUUUUUUCCUUUGCAACGCACGAGCACUUUAUUCUAAUAUAAAAAGCAGCAGUUGUACUUUUGCUAGGUGCACCCAGGGAAAUAUACACAAAACAUCAUCAUCCCAUUCCUCAGCAAUCCCAUCUAUUUAUCUAACGGCUGAAAAAGGAUGAGGGUGUCUUCUGUCUUACAGUGCUAACAUGAAAUCACCGAUCGAUUACCCAUCCCAACCCAUCGAGCCCCAACUCCUCAUUGCGCUAUGUACGCCGUUGCACCUCCGGCCUCGCACCUACGGAUCCGAAGCUGCCGGCACACUACAAAUGAAGCUGCGCCUCCUACCUCCUUGCCAUGGGUCAUGAGCCACCGGUGGUGGCGCCAGCCUGCUGGCACUUUGUGCCUCGCCGGGGUCACUGCCACAAAAGGCCUCACUGGUCUGCAACUGUCGGCACUCCCCGAGGCCCAAGCGAAUCACGCCAUCUCCGUGAUUGGCACCUCCUCGCCGGACACCGCGUGACCCCCUCGAUUCACGCCCAAACUCCGGUCGGCGAUCUCCUCUUGCAACCUAAGAACACGCAUUGGCAUCCCCUAAUGAUUCGCUCCCGUGCACCGAAUGACAGAUCAACGCCACCUUCUCCAACGGUACGCACCAUCUUCUCAUCUACCGCCGAUGCACCCUCAAUCUACAUGGCCACGGUCGACACCUGCUCUCCAUCAAGAAACCACCGGCCAACUCAUGAGUUUAGUCCCAAAGCAAGUUGUGAUAGCUAAGAAUGCAAGGAGACCCCCCAAGUUGGAUGUUCCUAAGUGCGAAAAACAUCGAAGGUGAUUAGACUAGGUUUUUCUCUUUCGAAAUUGAGUUUAAGAAAAACCGUACUAUUAAGAGGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.12%
ME_num:
MEP:
3.25%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.8602667031093 | 1.76024119856414e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.33540471774918 | 0.0284433352720656 |