Chr:
Chr10
Start:
7225514
End:
7228433
Strand:
-
Ref_name:
OSA-LNCN1039
Sequence
(OSA-LNCN1039.1):
AGUGCUGACUCAUUCAGAAUGAAGGGAAAAUCGUCUAGAAUGCUGGAACAAAAGUAGCCAAGUCACUUAUUACCGGUGUCUCUGAUUUAAUCUUUAUGACAUCAUGAAAUUUUAAUAGCAGGAAUCUUAUAUAUGAAGCGAUCCUUAAAAGUUAAAUCCUAUUUAGAGAUGAGAUUUUAGGGGGUUUCAGUGAAGUGACUUGUAAUUCUCAGUGUUUGGGAAAUCAUUGGAUGGUCGGUGAAGUCAUGCUCAUGAUGACAUAGAGCUCAGCUGCUAAUUUUGGCUGAAUAUGUGACGAUGGAAUUGCUUAGCAGUUUGUGGUAUUUAACCUGAAAUUGGUGCCUGGAAUGAUCACAGUUUGAGAAACUGGUCGAACCAUGAGGGGCGAGCAUGAGGGAGAGCGCUUCCGCCCAUCCACCUCCACCGCGGCGGGCGUCCACUCCGGCAUCC
Sequence
(OSA-LNCN1039.2):
GAAGGAUAUUGCUUCCACCUCCCCGUGCAGCACGUUUCCCCAACCCACGCGAUUUUCUCCGCCUUCCUCGCCUCCUUCCCACAACCGCUCCCACUCGCAUCGGCUCCUCUCGCUCCUCUCCACACUCCCAGUUACGGCACCGAGUUUUUCAUCUCCUUCCUCGUUGUCUCCUUCCACCGCUCCUGUACUGCCUCCCUCAACUGCGCAGCAUCGGAGCCACGCCUGGGUGCCCGCCGCCGCAUCGGCGCCAGGCCCGGGGAGCAAGCUGCUCCACCCAGCCGCUCCAAUCUUUGUCGACGCUGCUGGUACUCCCUCACCGCCGCCACAUCAGAACCGCGGGGUGGGUUUCCCCCUCGCCCAUCCCCAUCCGAUCCUUUUGCUUCCUCCCGAUUGAUUCCCUACGGGGUGCAUCCAAUCUGCGUGGAUCUGGUACCGCGCGUGCUCGAUUUGCAAUUCUGGGUGUAGACUUGAUUUUGGGGUAAGUACUUUGGUUUGGGGGCUGGUCAAAAGGGACGACCAGAGGAUCUACGACACCUCUGCGAAGUGCAAACCAUUCGCUGGCCCAUGCCACCAAAGGCAAGGAAACCGUCAGCAAGGUCGGCAUUGCACCCCCUCCACAGGGCACACCAAAUCAGCCGUGCUGCCCCUGCCUGCCCGCGGCCAUUUCGCCGGCGCUUACGUCUGUGUGGGAGGUGGAAAAGCAAAUGCGGUGGCAAUGGGAAUCAUGUGUGGCGUUCACUAGGGAGCGGAGGCAGAAACGCGGAUGUCGUGGCUGUGGCGGCGGCGCUGGCGGCGCAGAUUGAGCAGAUUGGUGGGCGUAGGGAGGCAGAGCGGUUGGCGGUGUUCUUCCAUUUUUCACAGAUCGGGGCCGGCGAUUGGGAGCACUGGAGGCGGCGACAGGAGAGGGUGUGGAGGGGUUGUGGGAAGGAGGCGGCGAGGAAGGCGGAAAAAUCACGUGGCAUAUGGGAGGGAAGCAAUUUGAGGAAGGCGGAGAAACGCGUGGGUGGGGCUGUGGGGGCGAUCUGCGUGAGGACGCCCAAGCAAUCUCGGUCAUUCCAUCGAAUGCCGAUAAUACCGUCCGUUAGAUUUGUUCAAUGAUGAAUGUCAUCCAAUUUAUCGCAUCCUAACGACUCAGGCGCACCUAGGGGUGGACAGGAAGCUCGUGACUCAUUAGCUCGGUUGGCUUGUGACAAGCUCGGCUCGGCUCGGCUCGUUUGAUUUUCCUAACAAGCCGAGCUGGCAUUUCAGCUUGUUAGAGAUAACGAGCCAGGCACACCCGAGGCGCACGCAGGGUCACGCGGUGGGAGAUCGAUCGCGCACCGGGUCAUCGCUGGUUUCCUUCCACGUACCGCAACUCAUCUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.79%
ME_num:
MEP:
9.15%
HE_num:
HEP:
3.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.93
Avg Expression:
3.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.98152687229775 | 1.95925249998638e-06 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.66523215135168 | 2.44817998430282e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.27524686302869 | 1.23556986447871e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.97348312282795 | 1.73719113753478e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.41046577074633 | 1.16739434465009e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.78134815985612 | 5.5154902935956e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.43680552051262 | 6.35246240128557e-10 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.0389902347146 | 2.19996936089616e-08 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.3741143296582 | 2.25514865391696e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.41770422019569 | 0.00313724445747893 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.23887624078667 | 1.3190036513741e-24 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.98014774697811 | 7.72142343451196e-08 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.88164075266594 | 7.84854896171479e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.70445528797379 | 2.56444884882239e-06 |