Chr:
Chr10
Start:
7008152
End:
7008878
Strand:
.
Ref_name:
OSA-LNCN1036
Sequence
(OSA-LNCN1036.1):
UCCAUCUCUUCCUUUUAGAACCAAAGCCGAUAGCAUGUAUUUGAUCACAUCGGCUUUGCAUACAACAUUGCAUUCGUUGGUCCAACAAAUAAUGCCUCAACUUCGGUAUCGAAUCCAUCUCUUCCUUUUAGAACCAAAGCCGAUAGCAUGUAUUUGAUCACAUCGGCUUUGCAUACAACAUUGCAUUCGUUGGACAACAAAUAAUGCCUCAACUUUGUGCAUAGCAUGUAUUUGAUCACAUCGGCUUUGCAUACAACAUUGCAUUCGUUGGACAACAAAUAAUGCCUCAACUUUGUGCAAGAGAAGCACAAACUCUGCAACUCACUGCGACAUUUCCUAUUUAACUUGCUCCUCUUCUCUCUGAACUAGCGAGGUGGGAUUAAAGCUUAGCUACAGCUGCACUGCUGCUGCUCUCUGCUCGAUGGCUUCACUGUCGCUGCUAGCUAGCUGCUACUGCUUUGCCUUGCUGUUGCUGCUGUGGGCUGUGCAUGCAUGCAUGGGCUGGCUUGCUGCUGCUUGCUACUUGCUGGGCUGCAUGCAUGGGCCAAGGCCCAAGGCUUUAGCUGGACUGCUUAGUUUGCUCUUUUCUCUCUUUUCUUUUACUCUAAUUAUUGCGGGGCAUUAGGGCUUUCAAAUUUAACCAGGAACUUCCAACUUCCCCUACUGGCACCACGUAUACAGUGCAACUCAUUGAUUUUUUCGUUCUCGCUUUAUCGCAAAAAUUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.13%
ME_num:
MEP:
15.24%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.88
Avg Expression:
2.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.85710738307625 | 0.0231001911781616 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.76886216319715 | 0.0103167493858158 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.80687540878095 | 0.00809073468777004 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.92819742804741 | 0.0226332026599931 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.16065400974318 | 0.045838489788833 |