Chr:
Chr10
Start:
6872476
End:
6873933
Strand:
-
Ref_name:
OSA-LNCN1035
Sequence
(OSA-LNCN1035.1):
GUUUCUUCAGAGAGGCCCGACUUAGCACCAUCCUAUCCCACCUCCGUCCUCUCCUCGGCUGGUCGGCCCAUUGGCCCAAUAGCCCAUAUCAGCAAAAGGGAAUAAUGAAACCCUAACCUCUCCUUCCCAAUCGAUCUUCUCCCUGGCGGCCUCCCGACCCUGAUUCCCGACUCCCGACGGCGCACGGGCACAGCGACAGCGGACUAGCGGAGGCGCAUCGGGGUCGCAGCAUCGCCUCCCAACCCCGACGGCGGUGGUUCCCAGCUGGCUGCCAAGCUGCUGCAGCUUCACGGCUACCCAGUGGCCACGCCUGCGCCCCCGGGCUGCCGCUUGCCGCGAAGGGCGCCAUCCGCCCAUCCCCUAUGGCGCCCACGCGCCGCCGCCCCUGUGGACUGUGGCGCCCAGGUGCCCGCGCAGCCACGCUUGUGCUCCGGCCUCCUCUGUCGUCUCCACCACUCCACCGCGCCAAACGCCCAGACGGCAGGACCCAGACGAAGGUAAAACUGGUUAGGAACAUUUUGGUAAUUAGGUUCGAAUAGGAUUUAGGAAUUUCGGAUUUAUAGUUCCUAGUUGAAUCCAGGAUGGUUCAUUUUAUUUAGGAUUUGAAUCCAGCCAUACAGGGAUGGUUCAUGGUUUAUGGAUGAACAAUUGAACUUUGAAACUUGUGAUUCACUGAUUUGUGAAGCUUUGUAGCAGAGUCAGUGCACAUAUUUAGCAGAGUUAGCAUGGUUAAUACUUAAAUUAGAAGACCAUAGUGUUGUUUUGUAGGUUUGAAACAUGAAGAGGAAAGUGAAGGAUAAAGACAUCGUCACUUAUUUUCAAAAUAUCAAGAAACGAAAAGUUUCUCUCUAAAUUGUAAGAUUUCUUAUCAUUUUUUCCAUUUUCUAUGCUUUAUAAAUCUGACAUGUUUUGUCAAUUAAUACUUUAGUACUGUACUUUAAAAUAUGCUUAACAUAUUUAAUUUAUGGUCAAUUCUAUGAAUCUAUGACUUUACGACGUCAUGCUUAUACCGUUAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
44.72%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
1.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.39585823080869 | 0.0352969607919937 |
2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.87214039329853 | 0.00016980352932631 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.61223591161679 | 0.0161872031363952 |
4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.63809001813268 | 0.0142370376983535 |
5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.51803070940197 | 0.0150655405183228 |