RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1034

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

6889887

End:

6890265

Strand:

.

Ref_name:

OSA-LNCN1034

Sequence
(OSA-LNCN1034.1):

CCGCCGGCGAGGCAAGCCACCGGGAGAGCUAGCACGCUUGUGCUCUGCUUGACCGGAGAUUGUGGAGGAGCCCCUUCCCUUCCUCCCCAUCUCUCUCUCUCGUGAAAAAUUUCCCAUCCCAACCCUAGCUGCGCAGUCGGCGUGGUAAAGGGCAGCGCAGGCGCUGUGCAGCGCGGUGGCGUGGUGCUCGCACGAGGGUGCAGUGCAGGCAUGGCGGUGUGGCACACGCGCGGCGGCGAGGCGCAGGCACAGCACGGGCGGAGCACAGGUAUGCCACGGAGCUAAGCUGUUGGCAGUGUGCUUGCUGUUCCUGUAACCAGCUACAUGGUGGAGAUUUGGAGAUCAUCAGACAGUGUUUUGGCUAGCUUUAUUUAUGCGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

475

LEP:

96.54%

ME_num:

8

MEP:

1.63%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

1.00

Avg Expression:

2.64

Tip: OSA-LNCN1034 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN1034 is not a differential expression ncRNA.