Chr:
Chr10
Start:
6649166
End:
6688721
Strand:
-
Ref_name:
OSA-LNCN1033
Sequence
(OSA-LNCN1033.1):
UGUUAGAAUAAAUGGGCUAGGCCCGAUUUUUCUAUUAAAAUCUCAAGGGCCCAUAAGAAAUGUUAAGGAUAAUAAUACCACCCUGGGAAUUAAAAGUGGAGUAUCUCAACUUAAAUAGGGAGUUAUUGGAGGCUCCCUGUUGACCGGUUGAGGUAGGGAUCGGAAAGCCACACGCGCGUGGCGUGUGUUGCGUUGCAUCUCUCUCUCGAUCCUUUUGCAACGGACCGGAAUCCAACCCCGUGAGAUUGCCUCUGUAACGGGCAGACAAUUCAAUACGCAUUGAUCAUGUCGUUACUGCGGCAACGGGCGGAUUCCUCUCCUACGCUAUUAGGAAACAGAGACCCGCACCCAGAGGCGGAGCUGGCGCACCUGGAGCUAGAGCUGGCGCACCGAUCGACAACACCAACGGAGGCAGUUCUGCCUCACAAUCCAGCAAAGGGAAUUUCAUAGGGUUGUGCACUUGUGCGAAAGGAUACAGCAUAGAUUCAUUAAGUAAAUUCAAAGGAAGAUACACAUAGAAAAUGUCAGUUACAGAUGAUGAGAGAAUCAGGCUGAGCAACAGGGCAAGUACAUGGUACUUCUUGUUGGUGAUGCGAUGGGAUCAGGGGAAGAUUUCAAGUGACGCAGAAGAACUAUAUAUUGAUCGGACGGUCUAUAUAUAUUGAGAGUAAGCUGGCAGCUAGAUCGACGAUAAUGAUCGUGAUAAUUUCUGGGUUAGUGGAGGAAGAUGGAGAGGAUUACAUGGCGCAAUAAAAACAAAAACAAUCGUGGUGAUGGGUGGAAUAAAAUGGAUUAAAUGCGAUCAUUCGCCUGCUCUUUCAUGGCGACAGUUUCAGCAUUGGCGAAUGAUUUCCAUGGGUGGAAGGAGCGCAGCUUUACCAUUUGAUUAGGAGGUGGGUCUACCUGGGCUGACCCAGCAAUUUGGGCACGUUUUCUUGUAGGUAAAUGAAGAUCUAAUGGUAUAUAUCUGAUGUACAUAUUGAUCGAAUGGCUGAUAUGAUGUUAAUGACGUGGCGAAUUGGAGGUAGCUUUGGGUUUUAACUUUAUAGAAAGAAGGGAUAGGCAAG
Sequence
(OSA-LNCN1033.2):
GUUUCUCACUCAAACCUCUCUCUCCAACCCAAGGUGACGAGUGUCGAACACCUGGUGGGCGGGGACUGCGCUGCCGCUACCUUGCCACUUGGCUAGAGCUGGUGGCGGACUGGCGGGGUGUGGAGUUGGCCUCGAGGCGCUGCUGCUGCUGUUGUUAGAACGAGCCGGAGGCUAUCGGAAGCCGAGGAACGGGCGUCGAACACCUUCGAGCGCCGCUGACGCCGUUCGCCUCUGCUUUACCCGGCCCGGACCGCGCGUCGUUGACCUUCGCCUUACUCCAUCAUUUGAUGGCGCACCCGGAGGCAAAGCUGGCGCACCUGGAGCUGGAGCUGGCGCACCGAUCGACAACACCAACAGAGACAGUUCUACCUCACAAUCCAGCGAAGGGACUUUCACAGGAUCCCUAGGAAGUUGAUGAGUUGAGUGAAGACCAGGGUCAGCAAGGCUGUGAGCAAGGCAAGUCAUCUCUAAUCUUUGAGCAUGUUAAACCUAUUGUGAAGUUAUGUUGAUUUAAGUAAAAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.46%
ME_num:
MEP:
7.52%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.91
Avg Expression:
1.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.6108448093993 | 0.0338233678821067 |