Chr:
Chr10
Start:
6248550
End:
6249683
Strand:
-
Ref_name:
OSA-LNCN1025
Sequence
(OSA-LNCN1025.1):
CUGCGGACAAAAUCAAAAGCAAACUAAGCCACAAGAAAUCUUACUAAACUGUAACCCACCAAUGGCAAUGGAAGCAAUGUAUAAUCUGAUCAUCCAACAAGAAUCUCAAGGAAAAAAAAAUCAUUCAUGCUACCCGGCACUUUCGUUGAGAUGUUUGGCCAACAGAAGUUACAGAACAAGGGUUUCUCCAAGGUGUCAUCCUCAAUGACAAGGUUCAGGGGAGCAAUUUUUCCUCUUAGUAGUUUUACUAUGCCAGUUGUGAUUGAUGUUACUAGUCCAGCAUCCAUACUCAAAACCAAACAAAAUGAAGUGGGUGUCAACAAAUAAGCGCCUUGGGGCUUAGCUUUGGCCUGUUUUUUUCGUGCCAAAGAAAUAACACACUACACUGACAAAUUUUGGUAAUUUUUCACCUAAGUUUUGGCCACAUUGUAGUUACAAACAAAACAGUAUGGAAAUUAUAACUAAAGAUAAGAAAUUGGCAUCCAAAGACCUCAGCCCAAACAGCUCUAACAUAUCACCCACACAAAUCAUGGUUGCAAUGACUCAGAAACUACAUAUAAGUAUAUCAACUUCCGUCUUCCAUAGAAAUUUAGGCUGCCUAAUUUUACUUAUCCGUGACUUAGAAACUACUCAAAUUUUUUAUGUACAUUUAAUUCAAGAUAAUGGAGAACUCAUGUCAACUAUAACUAUUUAACUAAUACUCCUGUACAUAGUAAAUAAGUAAAAAUAUAUCAUAGUUCUUUAUACAAACCUUUGCAUAAGUUUUUUACUUCUGUACCAAGACUAUACAUCGAGAAUUGAAUUCAAUCUUAAAGUACAUCAAAAAUAGGACACCAUGAAUUAUGCAUGCCUUUCUCAAAUUGAUAAGAUUACCACAUUGCUGCUUAAAGUAGAAAACGAGUAUCACAAACACCAUGAAGCACAAUGUAGAUGACAACAGCAUCGUAAACAUAAGGCCUUAUCUCGUAAACAACGAAGCAUAAUGAUAUGAUAGGUUUGAACAGCAUUGUAAACAUGAUUAGAUAUUUGUUUUUUUUAUCUAUUUCCGAAAUACAUAAUUGCAAUCAAUAGGGGUCAAGGAAACUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.24%
ME_num:
MEP:
76.02%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.78
Avg Expression:
5.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.49585909376882 | 5.72499765214732e-07 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.94934117940721 | 0.00122248516734126 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.02966793612812 | 0.000121914889781852 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.04004426323318 | 0.00183881155237931 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.76515485545316 | 0.000309595959730777 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.56677833108677 | 0.013098768939923 |