Chr:
Chr10
Start:
5790662
End:
5792230
Strand:
+
Ref_name:
OSA-LNCN1014
Sequence
(OSA-LNCN1014.1):
GAAGUGCGAGAGAAGAGUAUUUGAGACUUUUAGCCUAGAACCCUCUAGAAGUUUGUGCUCUCAAAAGAUUUUUUUUUUCAUAUAUGAUCUUAUUUACCUGCAAAUUUAGAGGUGCCAAGUGGUCCAAUAGGCUUGCAGGAAACCUGCCAGCUUUAGAUUAGUAGAUUUAUUGCAGAUGAACCUUAUGUGCAAGAAUCGUUUGUCGACUAGACUGAAAAGAUAUCAGAGUAAAAUGUAUUCCUUCCAUUUCAAAAUAUAGAAAGUUGGAUAAUUUUAGAACGAAGGUAGUAAUUGUGAUUCUCACAAAAUGGGUAGAAAUUCUUCUGCAAUCAAAACUAUUUUUUUUAAAGAAAAAAAAAUCAUUUUUACUCCCUCAAACUAAUUCGAUGGAUCACUUAACUCCCUGAACAUUUUAUCCCCCAAAUUAUUAAAAAUGGUUUGUUUUACUAGAACUACUAUUAGAGCGCACUUCGUUCCUAGUAUUCCGUUCACAUUAUUAUCGGAGUAAACGAUUUACUUUAAUAAUAAAAACAACUUCCCUGCUUCCUAUUACACCCCAUGUCUCGUCAUCUUGCUUCUAGUAUUAUCGGAGUAAAUGAUUUACUUCGAUAAAAACAAGUUACCUCCUUAUUGUAUUUUUUCCCGUACCCAACUUAACACUCGCCCCCACUUUAUUUUUUCCUUUUUUUUAUCUGAAUCGAUCCACCAUCCCAGCGCACAGAUCGGUGAUGCACCAUGGAGUAGGACGACGACACCGUGGCGGUUGAUGGCAGUGGCUAGCGGCGGUUGAGGCGAAGGCGCUGCUUCGGGCCUCGCAGUCGGACGCCGGUCAGCACCUUAACUAGCAAGGAGGUGCUAAGAGCAACAACCGACGACUGCUCCACGUCGGCGACAUUGACAAAACAAGCAAGUCCUACAUUUGCACAUCGUGCUUCAUGUGGCUGGGUGCAGAGGAUAGGGUGGAGUCCGCCGUGAUGGAGGUUGUUUGCUACUUUUCCUUUGCUCGUCGUCUCUAUGACAUGAACAAGAAUGCUUUUUGCAUUUUUUUUUGCUUGCUAGAUGAAGGAUGGCUGCUACUGCGCAACGUCGAGCCCAUCUCUAUACCACGCUGCUACAUACUUCCAUGAUUCCAUCAUUGACUACAGCUCACCACCCGGUUGCCCUCUCUACUACCAAUCACAAGAGACAGAUCAACCUCUUUAUCCUUAUUGCAAGGUCUAGCAAAGCCACCAGGAUCCCUGUUUCACGAUGGAUUUUUGGCUGAAUCAUUUUUUUCCUUUUUGGUUUGAUUCACUUGAGAGUAAUUUUAUCACUUGUGCGUGAUUGUGCCUGUAAUUUUUUUUCAUUUGUACGGCCAUUUUGUGAUACAGAUUAACAAUAUUCUCAGUAUUAGUUUUUACUCCUAUACUGUGACAUCAGUAAACAUAUUACUAC
Sequence
(OSA-LNCN1014.2):
GCGCACAGAUCGGUGAUGCACCAUGGAGUAGGACGACGACACCGUGGCGGUUGAUGGCAGUGGCUAGCGGCGGUUGAGGCGAAGGCGCUGCUUCGGGCCUCGCAGUCGGACGCCGGUCAGCACCUUAACUAGCAAGGAGGUGCUAAGAGCAACAACCGACGACUGCUCCACGUCGGCGACAUUGACAAAACAAGCAAAUGAAGGAUGGCUGCUACUGCGCAACGUCGAGCCCAUCUCUAUACCACGCUGCUACAUACUUCCAUGAUUCCAUCAUUGACUACAGCUCACCACCCGGUUGCCCUCUCUACUACCAAUCACAAGAGACAGAUCAACCUCUUUAUCCUUAUUGCAAGGUCUAGCAAAGCCACCAGGAUCCCUGUUUCACGAUGGAUUUUUGGCUGAAUCAUUUUUUUCCUUUUUGGUUUGAUUCACUUGAGAGUAAUUUUAUCACUUGUGCGUGAUUGUGCCUGUAAUUUUUUUUCAUUUGUACGGCCAUUUUGUGAUACAGAUUAACAAUAUUCUCAGUAUUAGUUUUUACUCCUAUACUGUGACAUCAGUAAACAUAUUACUAC
Sequence
(OSA-LNCN1014.3):
GCGCACAGAUCGGUGAUGCACCAUGGAGUAGGACGACGACACCGUGGCGGUUGAUGGCAGUGGCUAGCGGCGGUUGAGGCGAAGGCGCUGCUUCGGGCCUCGCAGUCGGACGCCGGUCAGCACCUUAACUAGCAAGGAGGUGCUAAGAGCAACAACCGACGACUGCUCCACGUCGGCGACAUUGACAAAACAAGCAAGUCCUACAUUUGCACAUCGUGCUUCAUGUGGCUGGGUGCAGAGGAUAGGGUGGAGUCCGCCGUGAUGGAGAUGAAGGAUGGCUGCUACUGCGCAACGUCGAGCCCAUCUCUAUACCACGCUGCUACAUACUUCCAUGAUUCCAUCAUUGACUACAGCUCACCACCCGGUUGCCCUCUCUACUACCAAUCACAAGAGACAGAUCAACCUCUUUAUCCUUAUUGCAAGGUCUAGCAAAGCCACCAGGAUCCCUGUUUCACGAUGGAUUUUUGGCUGAAUCAUUUUUUUCCUUUUUGGUUUGAUUCACUUGAGAGUAAUUUUAUCACUUGUGCGUGAUUGUGCCUGUAAUUUUUUUUCAUUUGUACGGCCAUUUUGUGAUACAGAUUAACAAUAUUCUCAGUAUUAGUUUUUACUCCUAUACUGUGACAUCAGUAAACAUAUUACUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
4.27%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.99
Avg Expression:
4.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.60875989011314 | 0.000115699975605602 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.82157788143981 | 0.000171880640136712 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.82063917870346 | 1.68837897124539e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.80150216688891 | 0.000226215935395138 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.05932994553698 | 4.29945041740079e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.2676045640737 | 0.00034520027439471 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.38130857654686 | 0.00930311698036725 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.93387842470078 | 1.01182028502582e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.14517492561274 | 0.000429241425555109 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.67409622651033 | 5.21505135140183e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.15350494236866 | 1.24112494309834e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.70265441015849 | 0.000343924656739709 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.29603609365767 | 5.30248217935982e-06 |