Chr:
Chr10
Start:
5236216
End:
5237074
Strand:
.
Ref_name:
OSA-LNCN0996
Sequence
(OSA-LNCN0996.1):
CCCAAAAAUAUUUGUCACAUUAAAACCACCCACCUACCUCAUCCUCUUCUCCUUCUCUCCACAUCCCCUCCUCUUCUUAUCCACUUCUCUUCUCUCCUCCUCACUCUCCUCCCUCCCGGCCUCUCCACCGGCGACGGCGGCGGUAGUCCCAUCCCCUCAUCUCCCCUCUCCCAGAUCUAUCCGAGGGGAGGAGGCGACCGCCGGCGCAACAGAGGGCGACGGCGGCGGGCGGUGGAUGUGCACGCGGCGUGGGGAGCACGCAGGCGGCGACGGAGUUGACGACGAUGCUGCCGGCCGGCCUCGGCGACCUUGACCACGCGCGACUCUUCUGGAGGAGGCCUGCGGCGACGACCUGCGGCUCCCUGCGCCACCCCUGCCCUGCCAUCCCCUUCUCUCCCCUCUCCCAGAUCUAUCCGAGGGGAGGAGGUCGCCGCCGGCGCAACAGAGGGCGAUAGCGGCGGGCGGCGGAUGUGCACACGGGCGGCGGCGGAGCUGACGACAACGACCGCGACUGUGGCAACGACGAUGACGCUGCCGGCCUGGCUCGGCCACCUUGGCAACAUGUGACUCUUUUGGAGGAGGCCUGCGGCGGCGGCUCACAACUCAGGAUCUCUUGGUGACGGGUGGCGGCACAGCAGAGGGCAAGCAGUGGCGGCGCCACUGCCCUCCUCUUGUGUUUUCUUGUGUGUUUUUGUCCGUUUUUGUUUGUAAGGACGUUUGUUAGGUUAAUCUGUGUGUUGUUAAUCUGUUCUAUUGAUGAUGCUAAUGUUGUAUUUGGAUUGAUGCCAAUAUUAUGUAUUUGUGAUGCUCUUGAUUUUGGAUUGAUGUCAAAUAUAAAUUGUUUUGAAUUUGGCGGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
19.31%
HE_num:
HEP:
23.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.75
Avg Expression:
9.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.28686960186806 | 0.000835025132230365 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.16166673325223 | 0.015232117678638 |