Chr:
Chr10
Start:
3934569
End:
3936912
Strand:
-
Ref_name:
OSA-LNCN0980
Sequence
(OSA-LNCN0980.1):
AGCUCAAACAGGAAUAGGCACUAUCUGUGCUGACAUAGCAUAUAAAAACAUUCAGAACCUAUUCAUAUUGAUGCCAUUUUAAACCAUACCAUCUUUUUGAUAAAAUCUAACAUGUGGAUGCAUUAGGUUUGCUACCAGACAUUGGUUAUGCACUAAUGUUUAUGAAAUUUGGCAACAUCAUAGUAAGUUACCAAAAUCUGGACAGGCCAAAUGUUGCCAAAAUUUGGUAAUGUAUAUCUGGGCACUAAACUAAACACAUAAAAAAUAGCCUACCAUGUUGGUAACUUACCAAAAUUUGGAAAGUUUUAUUUUGGCAUCAAUAGGUUGGACCUUGAGGUCCUAGACCACACAUAUGCUACAAGAAGAGUGUCACAGCAAAGAUAGUGCCACAAGAUUAAUAAUGAUUAAAUAUGGAGUGUCAGCUCUUGAUUAAUUCUGAUAGGGAAUAUGGCAAUAUGUAUUGUACAAUAAAUAAACUAAACUAUAGUUUAGAGAUGUUGCCAAAUUUCACCAUGGCAAAUCACUUCAUUUUAACAUUAAAGCAGGAUUCGAAAUUGUGAACCCCCCAACACGAAAUGAUUUCAACUAAAACUUUUGGAAUUUUUUGUGAAUUUGAUAAAAAGAAAUGUUCAUAUUUGACCAAAUUUUGUUCAAGAAUUCAAAUUAUUUCGGAAAUUAUGGUCAUAUCGGUAAAAUUUGAAUGAAAGUAUAGGACUUCUUAACAAGUUUAAGUGAACAGAGAUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
12.8%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.89
Avg Expression:
0.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.33175080269301 | 0.000110608044252073 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.91023601475469 | 0.00566622241268318 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.58299750454673 | 0.000368181099793189 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.45957508374821 | 0.00306823197268581 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.56072841814284 | 0.033341469513566 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.24115933752157 | 0.00125065268084119 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.45160949520573 | 0.000759918290550987 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.5782101454273 | 0.000510210933454988 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.12602959970725 | 0.000233274396007065 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.47628485475198 | 9.92267222162073e-06 |