Chr:
Chr10
Start:
3864966
End:
3871466
Strand:
+
Ref_name:
OSA-LNCN0978
Sequence
(OSA-LNCN0978.1):
AAGCAACCCGGUGGAACACCACGCGCCGCACCCCUCCUCCACCUCGCUCCUCCGCUCCCGCUCCCCGCCGCCGGCCAUGGUGCUCGAGCUCCAGGGCUGAAAGUUAGUGGUGAAGCAAAUUUGACUGCUGCUUUAGAGGUUGCCGAACUGGCACUGAGAAAUCAUGCCGACAAAACACUGAGCCAGAGGAUAGUUGUUUUUGUUGGCAGGACGGAGGGAGUAGGUUGCUGCUUGCAGGUCCGCCACUGCCCGUGGACAGACAGUGCUCGUCGAUCGCAUUUGCUGUAGGCGCCAGCGACUAGUCCUGCCAGGCCUGACUGGAGAACGGUGGGAUUUGGUGCUGCUGCACCCUCAGCGGCGCUGGUAUAGCAGAGUACAUUAUGCUCAUGUGAAUACAACCAAGUACAUUUUCAGAUCCGGUUGCUAGCUAGUGCCAUGGAGGAGCAGCAACGGCCACCUCCAUGACGCGACUCCGUCAAUGUCCAGCCAGCGCCAGCCAUCUCCGCCACCAACCACCGGCCGGUGUCUAGAUCUAUGUUAUAUUGUCAUGGAGUAAAAUGUUUACUCACACCAUAUGAUUGUUUCAUGCCGUGUAGGCUUAUUGUAAAAAAGUUACUAUUCUCAUAUUUCUCAUUGUAUUCAUAUCGUGUAGGUUUAUUGUAAAACAUUUACCAUGUGCUAAUAAGUGUCCGUGAAAAAUACUUGAGUCUAUUUAACUAUAUUUAACUAGAUAGUAAAAUUAUUACUCAACAAUAACGAAUUAAUCUAACAUUAUGUUCACGAGUAAUUGAUUUACUUAGUGAGGCUCUAGUGUGAAAAAAACCAAUAACUUAUUGACGAAAACAAUAUUGGGCGCGGACGUAAUCUCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
19.92%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.88
Avg Expression:
3.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 7.94155892759001 | 0.000427425094911912 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.62806667683143 | 0.0272921623299343 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.06907731109112 | 0.00120079354297405 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.88662449663743 | 0.00112811168210496 |