Chr:
Chr10
Start:
2870235
End:
2884759
Strand:
-
Ref_name:
OSA-LNCN0967
Sequence
(OSA-LNCN0967.1):
UGGAGUGGGCGGCGGGCGGAGUGGGCGACGGCAGAGCAGAGGGGCAGAGGCAGAGAGGGGCGGAGACGAGGGGUGAAGCGGCGCGUCGUGGGCGGAGCGGCCGGCCGACGGGGGAGAAGUCGCAGCGCGGCGGUGGCCGGAGGGGCGCGGGGCGCCGACCGUUGGGAGCAGAGGAGCCGCCCGUGGCCUGUGGCCGUCUGCGGGCCUCCGUCUGUAGGUACGCGCCCCGGUGGUCGGUGAACACGUUGUUGCCGUUGGGCCCGCCGACGACGGUGCCGUCGAGGUCGUGCGACUUCUCCCCCCGCCGCGCUGUGGAAUGAAAGCAUACUGCUCGGCAACUACUGGACUACCUGCUGCUGGCUUGGGCAAAGCUUGCUCGCUUUGCUACCUGCUGCAUGCCCUGCCUCCUUGCUCUCCGAUCACCCAACCGCUCCAUGCACAAACCUGCAAAACACCUCUCUCUCUAGAUGUGUCCCUGUGUACUGGACCAGCCAUGUUGCUUGCAAGCAAUGCUGCUGCUGACAAAUUGGGAUCACAAGGAAAAGAAUUAGUAUAUUCUAGCUAGCUAGCUGCUGCAUCAGAUAUUCAGAGAUGGUGAGUGAAUGGUAUCAAUGCCCUUUCAGUGUCUUGCAUGGUGUGCUGCCUGCAGAAAAGGAUAGCUUGUUGCUAGCAGGGCACACAAUUGUAAAGGUAUGCAACAACAAGGUGCUGCACAUCAUGCCAUUUCCCUGGCAUGUGGAUGCUGCUAAUUGCCUGACAAGAAUUGGGCCAAACAGCUUUUAGCUUUCAAGGGAGAGAGAUCGGUCGAUCGAUGAGCGUGUCAACAAACGCACUCGAUCGAUCAUCAGAUGGUCCAAUUGACAGAUAUAUGUUCAGGCAACGGUGGACAUGCUGUGUGUGUCGAUCGAUCGUACGUCCUUCAGAUCGAAAUGCAUGAAUAAUUCCUUAUUCCUGUCCUAAUUUCAGAUGAGAGAUGCUGCAGGUAACGUUAACUAUGCAAGCUACUAGCUACCUGCAAAUCUGCAACUUGCUGCCUUCAGAAAAGUUCAGCGAAUAAGCCACUACAAAGUUCAGAGAUCAAGCAGCUGACGGUGUGAGCACAAUGCCUGACGUAGGAUCAAGCUGGCUACGCAUGUCUAGCUCAUUGCUUGAUACUACUCAAAAUUAAACUAGCUCUACACAUCAGAUUCUGAGCAGUUACAAAAAAGUUCAAAUCUGAAUUAUUACUUCAAGAACUAUAGCUAGUAUGUUGAACUAUAUAUACUGUUGGUGGCAAGCAUCAUCAGGUCGAUCUUGAUGAGGAUUUUGCACCCAAAAGACAGGUAGGAAAGAACAAUGAGAGCAGGCAUGAUGCUACUUAAGCCCCCCAUAUCUCCUGAGAGUCAUGUGAAAUCAGACCAAGAUCUCCCAAAGGUAUAAAGUACAAACAUACACACGCUCUCUCUAUAUACUAUAUAGUAUAUUUAUGUCUGCAGUUAGCUCUUCAUGCAUGUGAAUGUGCAAUACUUGAUUCCUCUCUGGCGUGUACUAUAUAGCCUAUUAUACUUGUCAAACCCUGACAAAUUAAACAAAUACUUAUAUAUAUACAUAUAUAGACAAGUACUUUUAACAACAAAUUAUGUAAAGUGAGCUUUAUAUAUUUUGUCAAAUUGACAUGCAAUGCAACAUGGUCUGUCGUCAAACUGUGGUGGUAUCAAUGUAUGUUCUCCUUUUUGCUAAAGAUGUUGUCUCAUCUACACGUUCCAAAAGUUGUCACGAGCAGUGUGAUACACUCAUGCAUUCAGCUACCUAAAGAUCCUUUUUCUUCUUCUUCUUCUGCUCUCUCAUGAAUAGAUUCUUGCAGCUGCCUUAUGCAAGAGAGAGUAGAAGAGUAUAUAUGUGUAGGCAUGAUUCGUUAUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.1%
ME_num:
MEP:
40.45%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
2.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.27894488953209 | 0.0186718574806771 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.48198065681708 | 0.0260489523304321 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -3.46060460187867 | 0.00424007195174705 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.77225644541968 | 0.039833883864346 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -4.94192617640557 | 0.0237931263623332 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.9716916258311 | 1.67785714613785e-13 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.05437416069863 | 0.000690766969375813 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.34211342122381 | 0.0294732914507921 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.48922301525196 | 0.00294898022980996 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.87796212162856 | 0.0313887049851551 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 8.29826058085753 | 3.3421894193662e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.15364380933369 | 0.0294639465950993 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.50132187079971 | 0.015041466620993 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.786189807015 | 6.09493596187615e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.17363764491537 | 0.00010532417221113 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.42303667057096 | 0.0140841037467062 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.22698681718055 | 0.0446047923511285 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.06293214434911 | 9.01993664131176e-19 |