RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0961

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

2690942

End:

2706483

Strand:

+

Ref_name:

OSA-LNCN0961

Sequence
(OSA-LNCN0961.1):

AACAAAUAUGCAAGUGCACAAGGAUACCAAAGGAUGGCAUAAUAUAGGCUCAUUUGCAAAAGCAGCAUUUAGCAAAACAUUUAAGAGAAGUAAAACAGUGGAGUAAUUAAUCAGAAAUUUUAAUCAACACUGAACAGCACACCCAUGCUGUACAGGCCCAACCAUUCUGAACAACCAUACCCGGCUGAACAGAUCUAACUCCAAACCAGGAGCUAAGCAAAUUAUUACCCAGUAUAACAUCCAUAAUUAUUGUGAGAGGUGUGAGACUAAUCACGAAAAACAUUGCUCAACCCGCCCAUAACCACGGGCACGGCUAUUCGAAUAGUUUUACUCUGGCCAGAGGUGUACCACUGUACCCACAAGACACGAUUCCACACAUGUUGCCAUGCCCCGAAAUACCACCACGGCAUUGCAAAGGGGGAAAUCGUGACAAUACCCUUUGCACAACACAACUCAAAACAGUGCACCGUUCCUGGAUCAUAAUCACCCCCU

Sequence
(OSA-LNCN0961.2):

GUAUAACAUCCAUAGUUAUGGUGAGAGGUGUGGGACUAAUCACGAAAAACAUUGCUCAACCCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUGGCCAGAGGUGUACCACUGUACCCACAAGACACGAUUCCACACAUGUUGCCAUGCCCCGAAAUACCACCACGGCAUUGCAAAGGGGGAAAUCGUGACAAUACCCUUUGCACAACACAACUCAAAACAGUGCACCGUUCCUGGAUCAUAAUCACCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

255

LEP:

51.83%

ME_num:

230

MEP:

46.75%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.81

Avg Expression:

2.13

Tip: OSA-LNCN0961 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.65199111308850.00634961847270232
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.825977949098040.00388873642408459
3Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-2.388219101004730.047070453752308
4Nipponbare // leaf // control--/--Nipponbare // leaf // drought-2.388362719502690.0475477379361275
5Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-2.388432543728360.0471627740662954
6Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.252505883571930.0275722309444456