Chr:
Chr10
Start:
2312871
End:
2313926
Strand:
.
Ref_name:
OSA-LNCN0953
Sequence
(OSA-LNCN0953.1):
CCGCCUCCCAAUCUCCCACACCUCCCAAUCUCCUCUCAGCCGCCGCCCUUCCUCCCGGGCUCCCGGCUCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGUGUGGCGGACGGCGACGGCGACGGCGACGACGGGGGCUGGGCCGCGUGCGGCGAAUGGCGACGGCGACAUCGGGGGCGGUGCCGCGUAGGGCGGAUGGCGACGGCGGUUGCUCGGCGGCGCGAGGCGACGACUUGCGGCUUGCGGCGACGAGCGUAACCGGCCGCGCCGCCGUCGGGGCGGCCGGGUCACGGCGACGGCCAGCGCGAGGCGACGUCGUGUGGGUGCGGCGGACGGCAACGCCGGCCUCGGGGCGGCCGGAUCCGGGGUUGGCGGCCCUGGAGCCGCGGGAUCCGACGUCGUGAGGCGACGACGACGGAGGGGGCUCGGCGGCGCGAGGGGACGGCGUGCGGCGGACGGCGACGAGCGGAUCCGGCGUGCGACGUGCGACGGCAACGGCGGGAACUCGGCGGCGCGAAGCGACGGCGUGCGGCGGACGGCGACGAGCUUUUUUCAAUGUUUUAAUUUGGAUUUUUCUGUUUAUUAUGAUUCGGAUAUCCGGCAAAAACGGUCGGAUAGUUUCCGACCGAAUCCGAGUUCUGACGGAUACCAUCGCUACUGUAUUUGAAUUCGUAUCCGAGAAAAACUAUCCGAAUUCGUAUCCGAAUCCGAAAAUAUCUGAAAAAAUCCGACCGCAACAAUCCGCAUCCGAAAAACAGGAUCGGAACUCGGAAAUUAUCCGUACCACUUUUAUCCCUACCCAUAGGUGUCCCCUUGUCCAAGUAGAACUAGGGAAACCUAUAUGGAUAUAAUCUGAGUAGUCCUUGUCGUUUCCAUGUAGAACUCUAGUUGUCUUUCCUUAUUCGGAACUCCAUCCAUAUCUGAGGUCGGUUUCCGUAUAAGACAUGGUAUGUGGUGUGUUCUGCCGAGAUGUAGUCAACUGAGGUAUGUGGUAUCUAUAACCUGACAGAGACCAGGAGAAGUAAACGCAUGUGGAGACAUAUGAAAGUGGCGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.77%
ME_num:
MEP:
33.54%
HE_num:
HEP:
5.49%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.88
Avg Expression:
13.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.51447368551957 | 0.00141018231172346 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.53936614725552 | 0.000371311481378544 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.01895204914118 | 4.34956479159713e-06 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.73088485718926 | 8.23752809874283e-15 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.18115433001299 | 0.0192643401247905 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.71033266430957 | 0.000215211996606352 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.7988333634038 | 0.0146181963679268 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.10422888186508 | 0.0225495561435786 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.94133773841338 | 1.29296683372041e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.84372062052066 | 0.0354954263736501 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.7111441693421 | 2.70337812661351e-09 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.28106261032497 | 0.0026433383856078 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.30539751626291 | 0.00261556691421246 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.52407928763234 | 0.0386957847552309 |