Chr:
Chr10
Start:
2211278
End:
2213369
Strand:
-
Ref_name:
OSA-LNCN0950
Sequence
(OSA-LNCN0950.1):
GGUAACUGACUUAUUCGAUUGAUCGGUUAGGAUCACUCGUGAGUUUGAUAAAACAUUUCCCUGUUGAAUCCCUAACCCUAAAUUUGUUCUCCUCCCUCUCCCACCGCGAGUAGCAGCGGCGGCAGGUGCCUUCCCCACCGCAUGCGGCGGCCUCGCGGCCUAGGCGUGGCGGCGGCUACCUUCCCCAUUGCGAGCAGCGGCGGCAACAGGGACGGCGGCACCCUUCCCCGCCACGAGCGGCCGUGGUGGCACCCUCCCGCGGUUUCCAAUGUGCGGAUCCGGCGGCAACUAUGGAUGGCACCUCCUCAUUUCCGACUCUGGAUCUGGAAGUGAGUGGGGGUGGGGGUCAGAGGAGGAACAUGUUGCCCUCUCCGUCGGAUCUAGCCCCCCUCUCUAGUGACCUCAAUCCUAGACGGUGGCAUCCGGAUCAUCUCCUCAGCAGACACGCGGCGCGAGCCGUUGGCACAGGGCCCCGUGGCAUCGGUGUCCUGGGGUCGGUGGAGCAGCCACGGGAAUGAUGCGUCUUGAGCCUCUGGUGAUCGCCUCUCCUCGCUAUCUUCUUCUGCCACCACCGCCCAUCCUCUCAUUAUGUAUUGCUUUGUGAUAUGCUCGAUUCCGUUGGUUUCAAACUUUCAAUCUAGUGGAUCCUCCCAGCUGAUUUUAGUGAGUUCGAUUCAGAGUCCGAACCAACAGGAGGCCAAUGGUGAAUCCCGAUACAAACAGAUAUCAUGAAGCGGACAGUGGGGCAACGGACAAAAACAAAAAGACGCGAGGAGUGAAAAACGCGGUGACGAUCGGAAAGAAGUAGUUAUGGUUAAAAUAAUACUGCUAAUUAACAUACUACUAAAAUCAUUAGCAGUAAAACGUUGGGAGUACUAAUUAACCCAUCAACACGUCUCAUGCACGGCAACAGAUGGCCUCAUCCCUCAGGAACCUGCAUGCAUGUCCCAGGCUCGCAAUCCCACCUGUCCAUGCACGGCAACAGCUGGCCUCAGCAACCAACCGAAUGGAUAAGGCCUCAGGAUCCCAUCAACCCACCAAAGAAGCCGCUCUCUAUUUCCUCAAGAUACGGGCGCACCACCGCUCGAAGCUCUCGCACCCUCGUCUCACUCAUUUCCGUCGGAUCCCCUUUCCACACACAUCGCCACUUCUCCCCUUCUGGGCUCGAUGCCGCCACCGCGAGCAGAUCGAAGGUGGCUUGGGCCCAUGCCGUCUUCUCCUGUGCGUGGCUAGCGCGCGGCCGUGCAGAUCGGACGGUAGGCCAAGCCAUGGCGGAGACGGGCCCACGCCGUGGGAGGGAUAGCUGUGGCGAUAGAUCGAAGCAGCGGUCUCAACGGUGGCGACGUGGCGUGGGUUGACGAGCUCUUCGCCUCUCCCCUCCGACGGCGCAGAUAGGGGCGGAGGUGGCCGAGCGGCCUCCAACACAUCUUCUGAAUUCUCUAGGGUAGCUAUAGCCUAUUUUAGGUCUGAUUUAUUUGUAAGAUUGGGGUUUUUAAAGUAGUUUUUGGGGAUUUUCGGAUUUUGUUUUGUUCGUGUGUUCAUGCCUCUCUUUUUAUGGUCUGGUUCUUGUUUUCUCAUUUUCCUAUUGGCAACUUGAUUUUCGAUGCGGUUGGUUCCUCGGAUAUGGACGCUGGGGCCUGGGGCAAGGACCAGCCGUUGCCAUCUCCAACUCUUGCGUCACCUCGGACGGGGACGGGUGAAAGCGUAUUAGGACGAACGGAAAAUUACUAAUCUUUUAAUUAGUUAAGACACAUACAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUACAUAUAUGCUAGAUUUUUUUUCUUUGUAACACUUUUACAAAGGAUUGUAUCAUAUGCAUAUAAGCAUUCUCAUGUAUACAUAGUGCAUACCAACUAAAAAAUACCAUAAAAAAUUCUAGAAAAAAAUGUACAUGUGUUUUUAGUAGUAUUACAUCUAAUCUUUAAAUUCAUUAUACACAUAGAAAAAAAUAAAAUUAUGAUAGAUUUAUACUCUUAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
43.09%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.80
Avg Expression:
3.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.18805414563173 | 0.000576262066958565 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.28644742275075 | 0.000340068050116281 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.54766941456536 | 0.000571047405324837 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.99654342869067 | 0.0231660713988861 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.65234451357797 | 0.000241352405191793 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.85597770055941 | 0.00147481633987403 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.5065779720006 | 8.51219542304655e-06 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.04655350315927 | 5.17586501375947e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.49920035120962 | 0.00109856687171997 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.72389381161088 | 7.64423123862277e-05 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.70390114806685 | 0.0117138681711559 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.10823769822532 | 5.21297260330439e-05 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.5924214428171 | 2.77090289745397e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.9664205042353 | 8.30769411408295e-05 |