Chr:
Chr10
Start:
1729329
End:
1740258
Strand:
-
Ref_name:
OSA-LNCN0944
Sequence
(OSA-LNCN0944.1):
CGCCUUCCUACCACCGGCACCAUCGGGCACACCUCCCUUCCCCUGGUGGCUGCGCCUCCCUACCGCCGCCGCGGGCGUCGUCGCCUGCCCCUCAAAUUCCGCCGGUGGCUACGCCUCUCUACUGCCGGCGCCGGCGCCGUUGCCUGCCCUCCAACCAGUCCGCGCCUCACCGCCGCCAGCGCUAGGGCUCCACCCCGCACGUGCCUUCCCCACCGCCAGUGCCCUGAGGUGCAGCCGGGAAGAAGCAUCCGAUGCAGGAAUUAAGAGCACAAGACAACGAGAUGAUGGAAAGCAACACUGUCUACUAGAUGCAGUUUGUUAACAGUGAGUAUUUCUUUGGUGAAUUUAGUUUGCACUGAAGAACUGCACAUGCAAAGGAGGGAUUAUUGUCAUGUGUCAAGAAAGGGGACUUCAGAUCAUGUAGGCCAAUCCUAUACAUUGGCUGAGCACUCUCUUCAAAAGGAAGAAUGUGAUCACAAACAACAAUCUGGGCAUGACCUUCUACCAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
34.15%
HE_num:
HEP:
62.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.71
Avg Expression:
24.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 2.10877034205157 | 0.0446612609452807 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.55597578151382 | 1.11331720321399e-64 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.88123435763023 | 2.6335866616619e-41 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.91596273745861 | 8.56525984510491e-36 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.21462466404675 | 6.4767112327825e-05 |