Chr:
Chr10
Start:
48986
End:
53588
Strand:
+
Ref_name:
OSA-LNCN0915
Sequence
(OSA-LNCN0915.1):
UAAGUAAUCUAGCUAGGGCACUUAGCCUGUUUUUCCUUUGCUGGACUUCAAGUCAAAAAACGGCUAAUAUAAUUUGUAUGCACACUUUUAAACACCUUGAUAAGAUCCAUUUGAAUGGUUGUAGUCUAGCUUCACAAUUAAAUUAAUAGUUUUUACAUCCAUAUAUUGACUAGGGUUAAUUGGAUCAUGUAAAAUAAUAUGUGCUUACAAUUAUGUCAUUAGUUCAAAUAUCUACCUCAUUUACAUCAUUUACACGUGAUCCAAACAACCUUAGAAAUUUCUAAAAAUCUUCGUAUAUAUUAUGAAAUCAAAUAUACAACUUUACAAAUAUUCAAAACUAAAUUAAUCCACAUAUGUGCAAACAAACCAAACAAACCGAACAAAUCCAUCUAUAAAUGGCGGCACUCUUCAUACAUAUACUCUCUCAUAGCAUUAGUUAAUUGUGUUUAAUAAGAUGAAUAGUCUAAAAAAUCAAUGGUGUUAUAUAUUAAAAAACAGAGAAAAUACUAUAUAUACAAAAAAAACAAAUAGUAUUUAAAGUUUAGAAACUCCAUUAUUCCACUACAAUAAAUUCUCAUAAAUUCAGGACUGUACGAUUUCAAGUAUUUCUACUUUACAAUUUAUAUGUUAGAAGGGUAAUUAGAAGAAAAUCAUAACCACUAUGAAAACAAUCCCAAAUAAAUUAUUGACAGAAACAGGUUUAGAGUAGAAUCAAAGAAUAUUUCAAGAAAAAAAAUCACCCGCAUGCAAACAUUCAUAAUAAUGGUUCAAUCAAAAUUAUAUUAAAAGUCAGACAAUGUUUCACCCUAAAUAUGUUUUGUAAAAAACAUUUUUUUAACUAUUAAUUGCAACUAGGAAGAUAGCCCGUGCAUUCGUGCGGACAUGUAUAUUAUUGAUUGUGUUUGAAAAAUUUAUAUAGGCGGAAUAUCAACCCAUUGUAAGAUGCCAUAUUUCAAAAGUAUUAUUUCUCUAUGAAUUUUCUUCAUUGGUAUUGCUUAGAUAAUUUUUCCAAACUAUUUGUUAGCAUUUAAAAUAUAUAACAUUUGAUAAACGUGUCUAACAAACUAAGUGUAAAUGCACUUAAAACUAAGGUGUUUUAUCUUGUUUAAUUAAAUUCAUAGGGGCUUUUUUUAAAACCCUAAAGAACUAUUAUUGUUAAUAAUGUGUAUUAUUUGUAAGCUAGUCCUACUUAGUUGGUUCAGAUUGACACAAGUUGUUACAUACAUGCAUAUAAAUUAACAAAGAGAUGUCGUAUACCUCCUUCCUUGUGAUAUUUGCGGUAUAUACUUUCUCUUUUUCAAAGAAAAUACCUUGUUAACAUGAAUCCAAAAAAUUAAAUUUAAUAGUAAGAAAUAUAACUUUUCAACAAACUAUAUACAACAACCUUAGCGUGGCUUAUAUAUGCAAUAGUAUAUCGAGAAACUAAGCAUUUACAAAUUGUUAUAAAAAUGGGACAUGCAAUGGUUGGUCCAAUUUUAGUAAAAAUUAAGCACAAAUGCUUUUACGAACUUAUUAAAUUUUCUCCAAAUAGUUCAAUUUAGUCCUUAUUGACAUUUUUUGUUUCCUAUUUUAUUUUAUACCAGUUCAAAAUUUAGGCGUUAUGGAUCUUCAUAUCGUUGGUUUAAUUGUGAAUACAACAAUAGUUAGAUUAGAAAUCAUAUGAGUAUCUUAAAAAUUAUGCAUAUUUUAAUAUUUUUUAUUAUUGCAAACUAUAAAAGGACAGGGAGGAGACAUGUAGUAUUGUAUUGUGUCCAUGUGUGGGGGAGGCUGAAGCGGAGGGGUGGUUUUUUUCUCUAAAUGAUAUUAAGUGAAAACCGAUGAUCCAACUUUUUUCUCACAUUUCUAAUAUCUUUUUUUUAAUUUUUAAGACAUAACACAAGGCAGAUGAUUUUUUCUUUACAAUAUCUAUGAUUUUAUUUUUGUUUAAGACGGAAACGUGACAUUUUAAGUGCGCUACAGAGCAUGUACUUGUGAUAAUGUUAUGUUCUUUUUGCUAUUUGGUUACCAUGCAAAAGCAUAGGUGUCUAUGUUCAAAUGACGUGUUUUUAUUUUAUGCAGAAAUAAGUGGUAAUGUGGAUCUUAAAUUAUUUACUUAACUAUAAAUAAAACAAUAAUUCACAAAAUAAAAAUAGGAUAUCACUUAAGAAUUAUAAUCAUUUUUCUUUCUAAAUAUUGAUAGCUUUUAUUAAUUAGUUAAAAAUUAGAACACGGAGGAAUUGAAUGAGAGAGGAGAGGAAGAGAGAGCCGAAGGGGAGAAUGUACGCUUGCAGAUAAUUAUAUUUUUUUCACGGGUAAUAGUAUCUUAGUUGCUAUUACUUUAUUAAAUAAAAAUAGAAUAAAAGUUUUUACUCAUCUAUUCUUAUGGUAUAUUCAUAUUCAUAGUAGAUAUUCAAAAUAUGAACACUACAAAUCUAAUAAUAUUAUUUUGACUUAUUAUAAUGUUAGAAUUUGGGAGUAAUUUUUCAUUAUUACUCAGAGUUAGGUUAAUUCAAAUUUUAUCACUAUAGGUCUAAUUUAAUAAUUAUAAAGUUAUGUAGGAUGAUAAAAUCUAAAUCACUAUCUUUUUAUAAUUUUAAAUUGUUUGAAUGGCACACAGAAUUCAGAAAAUACACCUCCCGAAAGUGACAUAAUUCUUUUCAAAGUUAAAUUACACUGGAUAUGAGUCUUUGAACGUAAAAUAAUCUAAAGACAUAAGUGGAUCAAAUAUUAUAUGUAUGAUUUAGAUGAUAUAAAAUAUCAGUUGUAUGGUUUAGAUGUUAUAGUUGCUUAUUUCCAGCCAUAACUUAUGAUUUCUAACUAAUAUACUUUGGGAACAUUACUCAUAGUUAUCAUUUUACUUUAAUGAUUAUAGAUCUAAUUUGACUAUUAUGAAGUUGUUUACGAUAAUGAAAUCUAUAUUGUUAUUAUUAUUAUAUUUUAUUUUUUUAAUAAUUGCUUGAUGGCACUCAAAAAUCAAAAAGUAUAACCCAAAAUGACAUUCAAAGUUGAAUUAUAGUGAAGUUUGGUCUUCAAGUCUAAAUUUAUUCAUAAAUAAUUUAAAGAUGUAAGUAGAUAAAAAUUAGUUUUAUGAUUUAUAUGUUAUAGUUGCUCAAUUAUUUAACACAAAAUUUUUGGUCUAUCUAUGUAUCGCUCGACAGAUUUUUCCACUAAAAUCAUACAAAUGCAACUAAGGUAGAAAUAUAAUAUAAUUAUAGUGUAACUGAUAUGUAACUUUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAAAAGUAGUAUGCUAGUCUCACAAAAGAACAGCAGAAGCCAUUCGCAUAGUCAUAUAGCAGCUAGUAAAUAGAGAAUAUGCAUCUUCUAUCUCUCAAACGAUAGCCAACCAAUCACGGGUAGUGAACGAAUAAAUAUGUGCAUACAACACAGGGAAAAGGAAAGAGGACACGCAAAGAAACUGUGCGGCUAAUAACGAAGCACAGAAAUCAUCAAUGAAUCGGACGGUAAAAAAUACCGAGUGAUUUUUAGCCAAAAAAAAAUCUGUAAAUAAAUAUUUAGCAAAAUCGCAAAAUUUUUGGUUUUCUAACUAAUACUCCCUACAUUUCAACUUAUAAGAUAAUGAUUAGAUAAAAAAAAGGGACGUGACUAUGACAAAACCAUCGCUAGUUAGGCAUAAUAUUCUGCGACCUCACUUUAGUUGCUACUACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.1%
ME_num:
MEP:
18.7%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.73
Avg Expression:
0.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.89206739898911 | 0.00228315287022224 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.52658187319001 | 0.00666531573518806 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.01085735443605 | 1.09983977901239e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.31903234699802 | 0.000849620313132598 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.16336258932902 | 5.02186101404698e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.95472384444484 | 1.64092459344493e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.75810377532974 | 0.0139248777973287 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.8469805738315 | 0.0231452470417244 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.71772804922681 | 3.95432973408889e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.10055257433623 | 0.000423365750380589 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.13907023814419 | 4.75131864307989e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.48155526806695 | 0.0382638385671051 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.7126455107068 | 0.000447868942419676 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.39934760566539 | 6.1970799631674e-05 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.89178786331028 | 0.00119240736648899 |