Chr:
Chr1
Start:
42301738
End:
42303482
Strand:
+
Ref_name:
OSA-LNCN0894
Sequence
(OSA-LNCN0894.1):
AGACUGGAGCCACUCUCCUAGUCUCCUUACCCUAUAAAAUGGCCGUGUGACACAUCCCAAAUGCUACCAGUCUACCACAAAGCUCAAGAGCAGACAGAGCUGCAGCAGCAGCAGCACAAAGUGUCAGUGAGCUCAACUAAACUCUGAUUAAGGGUGAAAGCAUGGGUUUGUUAUGCUGCAUGUCGUCGCACGCCGAGGUGGUCGUCCCCAAGAAGCCCGGCGACUGUGACGACGACGACGAUUGCAGCAAGCAGGAGUAGCAGAAGAAGGUGAAGCAGCAGGGGAGCAGCAAGGAGGAGGAGGGGAAGACGACGACGAAGGCGAAGGAGAAGGAGAAGAAGAAGAUGAGCAACCUUGAUGGCGCCGGCCUCGUGACGCCUCACUUCCCCUUCCAUUUCCGGCCCGGCCUACUGUAAUUCUGCAAGAAAAGGCUGAGAUGAUAUCUGUUGCCGGUGAUUAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.65%
ME_num:
MEP:
17.89%
HE_num:
HEP:
66.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.84
Avg Expression:
228.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.2165387500246 | 7.71323688432186e-07 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.27360651715997 | 0.000332310519881654 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.3137067525517 | 9.56232448883309e-08 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.63472419662685 | 0.000365441325841293 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | -1.90223203133817 | 1.01203633889602e-09 |
| 6 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.11806958704684 | 0.00450533956157159 |
| 7 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.52109542274085 | 4.26005219213950e-11 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.4718544020792 | 0.00352674139697728 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.31280783867274 | 8.31321997616749e-07 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.13058101618925 | 0.0272834196318368 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.5879623842793 | 6.20073240286198e-06 |