Chr:
Chr1
Start:
41950181
End:
41951541
Strand:
-
Ref_name:
OSA-LNCN0887
Sequence
(OSA-LNCN0887.1):
GUGAAGCACAAAUCUUUAGCAAUAUACAGGAAGCAUUGGGAACAGAAGAGGAUCUUGCAAGGACAAACACUCAAAGAACAUGUCAGAGAUCUUUGCUAGGACAAGGAAAAGAUCUGGUCUUUUGAUUUCAGGACUCUUUUGACUCAGCCCCAUUUCAUGUCCUCUUUAAUGCAAGCCCCAAUUUUUUGACCACCUGAAAGCGACCUCCCAAAAAUGAACUUAAAAUAAAAACAAUCAUCAUAAAAGCAGGGACCUUGGUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.78%
ME_num:
MEP:
28.46%
HE_num:
HEP:
47.56%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.56
Avg Expression:
8.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.5402958069839 | 0.000186111597314786 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.89197336697602 | 0.00184135894937648 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.04164761007569 | 1.25518030539409e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.43396821431293 | 6.60018919707373e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.22727332407644 | 9.10810201935513e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.07594510507786 | 0.0017181838274053 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.2445900237001 | 0.00358386397866076 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.19372517884842 | 0.000385443679082671 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.40884447710894 | 0.0362559634067006 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.53899680456138 | 0.0051455158501873 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.12648336552595 | 0.00894403126737215 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.26931300160634 | 0.0113517286988487 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.7428215377108 | 2.97857295943303e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.10312927127756 | 0.0167845007272871 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.02531603134679 | 0.0435842448092088 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.20250995307265 | 0.00013115334047462 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.52215559023707 | 0.000191934308184349 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.86684180389902 | 0.000212191687678827 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.44405623764322 | 0.000121317707858661 |